result

Gene information

Detail information of AfisC5G00888

Location

Gene	Chr	Start	End	Strand
AfisC5G00888	chr5	167055240	167057515	-

Sequences

CDS

Protein

Gene

>AfisC5G00888
CGGATGGCGTCATCCGTGACCGAATCGCGATGCGGTACCAATCCCACTCACAGCCGCAGGATGCCTACCACGTGTCGAGATCCAAACACTCACATCAGTCCTGTCCACGTGTGCATTTCTACGGCCACCGCTTACTCAGCACGTGCCAAATCTGCGCTTCTTTTCTTTTATAAATATCACTCTTTTCTTCCTTCTTCAACTTTCAACCTTCTTCTTCCTTCTTAAATAAAACTAAAGTACTACTTGTTAGAATGAGCGGTGCAGATTTGAAGTTGCCGCCTGGATTCAGGTTTCATCCGACGGACGAAGAGCTAGTGAAGCATTATTTGTGTAGAAGATGCACTGGGATGAATATTGCAGTTCCGATCGTCGCTGATATTGATCTTTATAAGTTTAATCCTTGGGAATTACCCGGTAAACTTTACTAAAAGCACCTTCGCTTTTTGATTTTTTTCATTACCGTTTATATAAATAATACTTAGTAACATGTAACATGGATTAATTGCAGAGAAGGCCTTGTACGGAGAAAAAGAGTGGTACTTTTTTACACCGAGGGATAGGAAGTACCCAAACGGATCTAGACCCAATCGGGCCGCCGGATCCGGTTACTGGAAAGCTACCGGAGCGGATAAAGCTATTGGAGCTCCGAAACCAATAGGGATAAAGAAGGCATTGGTCTTTTATGCGGGTAAAGCGCCTAAAGGAGAAAAAACCAATTGGATCATGCATGAGTATCGACTAGCGGATGTTAACCGATCCGTTAAGAAATCGAATAGCTTGAGGGTATGCTTTTAATTTCTCGCTCTTTCTTCATTTCTATACTATGAGATTTCTAATTAGTGCAAAAATAATTATAATTCTGTAGTATGGTAATATTGCTTAATATCCAATAAACTTTTCGGCTAGTAAAACAACATGGCCATTAAGATTAATTTGGACCATACTAGTCACTGCAAACATCATCTAATTCAGCTGCATATGTCAAGTTGTTGCGCAAATATTCACGAAAGATACTAAAATATTCATCAATATAGAAAAATCTAAAAATGGCTGGGGCCATCATGCTATAAATTTGTTTTGTCGTGAATGCAAATGCAACTGTTAATGGTATTCATCAAGTAGTAATTTTCAATTATTAATGTGAAAGGCACATGATTCCTTCTTAATTAATTTATCCGTATACATAAATAGAAAAGGTCATTTTCTGATAATTACAGCGTTCGTACTTGCTATTGTTTGATGACTGAACATGCTTCCCACTTGTCTATTTGCAGTTGGACGACTTTGTACTATGCAGAATATACAACAAAAAAGGCGGGCTGGAACAGCATGTACCCGAAAACCCAACCCCGGCCCGAGGTTTACCGACCCATATTAAACCAGAGCCCATTATTTTTCCGCACGTGCCAATGGACATGGTGCATTTTGATGCAGCAGATTCAGTGCCGAGATTGCATGCAGATTCCAGTTGCTCGGAGCACGTGATTTCCTCGTGCGAGCGTGAAGTTGAAAGCCAGCCGAAATGGAATGAGTGGGAAAAAGCCCTTGATCTTCCATCGTATAACGGTACCGCCACCGAGTTTTTCCCGGATTTTGGGTCGGGCTCGTTTGATCCCAAGTATAGAGACCCGATTCAGGATATTTTGATGTACTTGCAGAAGCCGTTTTGAGATTTTTAGCTTTAACGGTGTTAAAACGGGTTTGCGATGGGGATGGAATAATATGTACATGATATTGGTTATAAAGTATAGAATGGAAAAAAAAACAATCATTCAACGTTTCCTCTTTATTTATGATAGTATTTTGTATCAAAAGTTATTACAGCCATTAATCATGATCGAGTCGGGCATTCATTCTACAAACACTTGCACAAAATCAATGTACCTGCCTTTGGCAATGTTAAATACAAGAATTTTTATTTCATGGATGGAAATGCTTTTACTAGAAAAACAGTTGAAAGTTGAAACATAGTGGTTTAAATTTTGAAATCAAAATGTTTTATAAGAGGGAATTACGCCTGTCCTTTCTAGAAAACTTTCAAATATAAACTCATCATTGAACAACTTATTACAAAACTACACTTCTTGAAAAACCTGTCATGGAAATAAGTTTGATTTTCACCGAATCGGTTTTTTTTATATATTCCGACTTTAAAGGTTTAAAGCGCAAATGTATAATCTTTTTTTTTTTTGAAGTACATGCGGACTTAAAAAGGGCGTATGCATAAAATGCAAATTTGCACTATTTTTATAGTTGCTTTTCAACGGAGTTTATTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261984.1	3.9e-115	NAC domain-containing protein 2-like
Swissprot	Q7F2L3.1	1.1e-85	Protein STRESS-RESPONSIVE NAC 2
trEMBL	A0A6I9QK32	5.2e-101	NAC domain-containing protein 48

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G01720.1	62.02	2e-93	338	ANAC002;ATAF1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00888	AT1G01720.1	287	92	8	6	277	5	289	62.02	2e-93	338
AfisC5G00888	AT5G08790.1	242	70	4	4	238	3	232	63.22	4e-83	304
AfisC5G00888	AT5G63790.1	287	77	8	4	277	46	298	56.79	9e-81	296

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	9	132	96.8	9e-28

Gene Ontology

Accession	Ontology	Name
GO:0001666	P	response to hypoxia
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0008361	P	regulation of cell size
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009507	C	chloroplast
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042542	P	response to hydrogen peroxide
GO:0043424	F	protein histidine kinase binding
GO:0043565	F	sequence-specific DNA binding
GO:0045995	P	regulation of embryonic development
GO:0046982	F	protein heterodimerization activity
GO:0048317	P	seed morphogenesis
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0080060	P	integument development
GO:1900057	P	positive regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network