result

Gene information

Detail information of AfisC5G01233

Location

Gene	Chr	Start	End	Strand
AfisC5G01233	chr5	230817006	230819067	-

Sequences

CDS

Protein

Gene

>AfisC5G01233
ATGACACGTTATATGCATGGTAGTGCTATTATAACTGGTGATGGTGGATGGAAAAGTGCTGGTGGTGATACTGCTACACTAGTGGTGACAACCACCAGTACTGATGGTCAATGTTTCAAGTGTTACCCTCAACACTTCCCCAATCCACTGCCAGTAGTTATAATAATACTAATAGCGTGCCCATTCAGGAGGAGGAGGGGTCCGCGTTCACCGATTTCAATTATTTTCTGCTTTCTTCCAGAGACCCTTTATATGTTTGTATTTAAGCACTTCTTTTGTGTAATGATGGTTTTCCATGATTACAATTTCATTAGATTTTACAAAAACATTATTTACTGTTTATTTTGGTAATATTGTCTACTTGTTTGCTTGCAATCTAATATTTCGAACTTTTTGTTGACACCGTTCCTTTTTTCAGCTGAAATTGCAGAGTCTTTGGCAAAGGACATGCAAAATGAAAAGCTATACGGGAGAACACTTACATTGAAACTGAAGACTGCCGGTTTTGAGGTAATCCGAGTTTTGTATTTCATATGCGCCTTTATATCCCTTTCTTTTCAGATGTTTGTACACATCCTTTTCTATATAAATGCGCTAATATAATAAGTTTCTAGGTTCGAACAAGGGCTGTATCTCTTCAAAAATATATTTATTCGAAGGATGAAATTCTGAATTATGCTTTGAAGCTACTGAAAACAGAGCTACCTCTTTCATTGAGATTAATTGGTGTGAAATTCTATTGTTTAACCTTATCATCCTCTTTGTTTAGCCAGTTCAAGTTTGCATGTAGCACTCATCTTTCAACTCCAAGCTTATCGCTTTTCACGCCCCCTCTCGGTTAAAAGAAAGAAACACTTGTAATAAATTAAATTTTGCACTTGAAGAAATTACAAACTGCTAACTAGTATTCATCTTGTTATTATTTAATATTTAACATGGTTTGATGTCATTTAAAGTGACATCCAGGTCTGGTGGTTTGTAGTAAAAGCATGATAGTAATAGAGCATGATATGTTCATAAGGTGAGTAGAGTTTTAGGACAGCAATAAAATATTTTAGCAAGTGCTGATTGGCATGTTGATTTGAGTGTTAAAGGGTCACAGTTATAGCATTAATTGATGTTTTAGTCATGGTAAAGACTGAGCCATCAACTGGGTTAAAGGGTCACAATTATATACATTTAACCAAACAAGTTTTAATCTCTTACCGGCACTTTTGATTTTGTGCTTCTAAAATGTTGACCTATTGAGCTATTAATCAAATGGTCTGGGTTCAAATCTTTCAGTTGTTTATTAAATGTTATATTTATCTATGGATAAATATTAACTCAAACGTCATAATAATCAAGCTTACTCTACCCTTTAAAGCACATTCATATCATAGATGGCGATCTTCTTGCTTTTCCCTGCAAATTGCCAATCCAAGTCCACCCTGCATGTATTGACTACTATCAACCCAAAATCTATAAAAATCCAACATGCATACATTATGATTTTTGTTGCAACTATTTGTTCATCCTCATTGTTCAAGCCTTTGTCATCCAGATTACTATTGCTAACTACGGATCACACTCTGTTGTCTATTGAGTTTGTTTTTATGAATTTGTGAATCTCCTTGTCTAACTATATGTTTGTCATCTGACATAAATTGAACATGTAGATTTACCTCCTGGAAAAACCCCACTTGAATGGAACACGCGAATAAAGATTGCTCTTGGAGCTGTAAAAGGACTTACATATTTGCACGATGTAGCGAACCCTCCTGTTATTTACAGAGACATGAAAACATCAAATATTCTACTAGACGATGATTTCAACCCCAAACTGTCTGATTTTGGTCTCGCCAAACTTGGACCGGTTGGAGACAAAACTCATGTTTCCACCAGAGTTATGGGTACATATGGCTATTGTGCTCCAGACTATGCAATGAGTGGTAAGCTTACCCTCAAATCCGATGTATATAGCTTCGGGGTACTTCTTTTAGAGCTTATAAGTGGAAGAAGAGCCTACGACTGTACCAAAGTTCGATCGGAGCAGAACCTATTAGTATGGGTAAGTCATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260999.1	1.4e-59	probable serine/threonine-protein kinase PBL21
Swissprot	Q0WRY5.1	7.2e-56	PBS1-like protein 7
trEMBL	A0A8J5G3A5	3.2e-61	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G02800.1	75.00	5e-57	216	CDL1	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01233	AT5G02800.1	132	33	36	167	161	292	75.00	5e-57	216
AfisC5G01233	AT5G18610.2	132	34	36	167	171	302	74.24	3e-56	214
AfisC5G01233	AT5G18610.1	132	34	36	167	171	302	74.24	3e-56	214

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	41	157	83.6	1.3e-23

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016021	C	integral component of membrane
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0040007	P	growth
GO:0007166	P	cell surface receptor signaling pathway
GO:0009506	C	plasmodesma
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0010183	P	pollen tube guidance
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0090404	C	pollen tube tip
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network