result

Gene information

Detail information of AfisC5G01316

Location

Gene	Chr	Start	End	Strand
AfisC5G01316	chr5	246326990	246328249	+

Sequences

CDS

Protein

Gene

>AfisC5G01316
TATATTTATGTGCATCACTGCATCCACATATAATACCCATCCATCCATTTCTGCTTTACTTTTGGTTATTCCTATTAAACCATATCCAAACCCTCAAAAACAAACATTGTATTCCATCTTCATATTCCATTCATTCTTCCTCTCACCAAACTTTCCAACTAAAATGGGTAGAAAATGCTCTCATTGCGGGAACAATGGCCACAATTCAAGAACTTGCATAAGTCCAAGAAGCACTTTATGCGATAACGGTGTGAGATTATTCGGCGTGCAACTTTACACTTCTTCTCCTCCAATGAAGAAGAGCTTCAGCATGGATTGCTTGACTTCTACTTGTTACAATGCTACTACTTCTTCCCCTTCTTCTTCTTCATCTTCATCTTCTCTTGTTTGCATCGATGAAGTCACGGAGAAGGCACCCACTGGTTATTTGTCAGATGGACTCATGGGCAGGGCACAGGAGAGAAAAAAAGGTATGAATATATACAAACATGATCGCATAAAGAACATTTAGTCTAATTCGTACTAATGTTTTGAAGTTTATTTTGGTTAATAGGGGTTTCATGGACAGAGGAAGAACACAAGTCATTCCTGATAGGGCTGGCAAAGCTTGGAAAAGGAGATTGGCGAGGCATATCTCGTAACTTTGTGAAGACAAGAACTCCAACACAAGTGGCAAGTCATGCTCAGAAGTACTTTCTAAGGCAAACTTGCCTCAACAAAAAGAAACGCAGATCTAGCCTTTTTGATGTATTCATCTATTTTCGTACAACTTCTTATATATGGTTTTCTTTTAACCTTTCCTTTTTTAGCAATTAACACACTTATATTCAGGTTGGAACCAGTGCTGATACTACCAAGTTCAGGGAACCAACTTCATTCACGTTTGAGGTTAGAGGAAACTCGAAGAACAATACTGGATTGGATCTGAATTCGTCATGTTTAGAACAAGAAGCTATGGCCGTTCCTAATTTAGAACTCAGCGTAGGTTCAAGCTCAATTTATCAGAGTAATTCAACGACTATTAGAGTAACATGAGCATATATAAAATTACGGGAAACAAATTGCAGAGGTTTCTGTCTCTTGTCACATATGAAAAAAGAATTGCATATAATAAGATTTATGTGAGATACATTTAAGAGATTATATAGTCTTTGTTGACTTTTTTGGATATGTAATGATATGTTTGCCTATTAATAACAAAGTTCTTAATTAAGACCATTGTAGTAGCTAGTAATATGTAAGAAGCAAGGTTTTGTTCAG

Functional annotation

Database	accession number	e-value	annotation
nr	QBM06261.1	6.2e-63	CCA-type MYB transcription factor 1c, partial
Swissprot	Q9LVS0.1	1.3e-36	Protein KUODA1
trEMBL	A0A482DH45	4.4e-63	CCA-type MYB transcription factor 1c (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G56840.1	54.79	2e-44	175		myb-like transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01316	AT5G56840.1	188	45	5	53	226	1	162	54.79	2e-44	175
AfisC5G01316	AT5G61620.1	189	76	7	53	230	8	182	46.56	8e-41	164
AfisC5G01316	AT5G47390.1	171	68	4	53	220	1	160	52.05	9e-41	164

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	157	201	41.4	1.1e-10

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009723	P	response to ethylene
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0010116	P	positive regulation of abscisic acid biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030307	P	positive regulation of cell growth
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:1901001	P	negative regulation of response to salt stress
GO:1901371	P	regulation of leaf morphogenesis
GO:2000469	P	negative regulation of peroxidase activity
GO:1905615

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network