Detail information of AfisC5G01427


Location
GeneChrStartEndStrand
AfisC5G01427chr5267478824267481841-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020265367.11.6e-62MADS-box transcription factor 32-like isoform X1
SwissprotQ8S151.11.3e-53OsMADS32
trEMBLK9LYZ86.1e-56OsMADS32-like protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G57230.135.821e-23 105AGL16AGAMOUS-like 16

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag183622.t1; g183623.t1; g289794.t1
Allium fistulosumAfisC5G01427
Allium sativumAsa0G00095.1; Asa0G04737.1; Asa3G03177.1; Asa3G04561.1; Asa3G04562.1; Asa8G00122.1; Asa8G00123.1
Arabidopsis thaliana
Oryza sativaLOC_Os01g52680.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105780.54e-23
PF01486.14K-boxFamily8716738.11.2e-09

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0006355Pregulation of transcription, DNA-templated
GO:0010093Pspecification of floral organ identity
GO:0019252Pstarch biosynthetic process
GO:0043068Ppositive regulation of programmed cell death
GO:0048316Pseed development

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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