result

Gene information

Detail information of AfisC5G01443

Location

Gene	Chr	Start	End	Strand
AfisC5G01443	chr5	271961841	271963789	+

Sequences

CDS

Protein

Gene

>AfisC5G01443
ATGTACAACGGACATCATCAAAGGGTGCCAACAGTTACGGTTTCGCCCTCGAGTACATCGAAAAGGGCACGTGTTCCTAACAGCCGCAATCAGAATGTATCATGTTTAGTTGAGGGATGTACAGCTGATCTTAGCAATTGTAGGGAGTATCATAAGAGGCATAAAGTTTGTGAAGTTCATTCTAAAACTCCTATAGTATCTGTTAATGGTCAAGAACAAAGGTTTTGCTAGCAATGCAGCAGGTATATCTCTTATTTCTTTCATTATATTTTGTCTATAATGTTTGTCTTCAATGATAATCATTAATGAAAATCATTACCTGGGTATGTTGATGATTGAACTGGGTGTATATATACGACTTTAGAGGAATCTACATACACAATAGACATTCTAAATGCAGTAGATAGATCAGATTAGGTGCCTATGTGGATGTGGAGTTAATAGAACTGACGTTGAACAATTATATCGACTTAGATTCTTTGGGTTCATTTAAGAGTATAAGTGGCAATTTTTATTTTCATACCAATTCCATTTAGGGAACATGTGGTGTAGAACATGTGGTGTAGTTGTGTAAACAAAAGTTTTTTCTTCTTCTAAGCAATCATGTACTACCGTTCTACTGGAGTAAATCACAACCGTTCATACTCCAATAGAAATGGACATACATGATTATCTGCTTCTCCGTAGACCAGGTGAACCGAACCTATCATATGGGTGGAAGGGTTTGAGTATGAATCATGATCGGCTTTAAATTTGGACTACGATGATGATTATGTTTTTTTTGTACTGATTATTTGGTTTTCACTTTGCCTCATCATATGAAACATATATAATTTGTTTATGCGTCTCCTATTTGCATTTGAATCTGGTAAAACATTGTCCAGTTTTACCTAGTAACTACCATCCAACTTTTTTATGATCTACCGGTGATAATAAATGTGGGCCAAAACATTAAGTTCTTTTGTTGTTTCTTTGGTCTCTTCTTTTATTGCTTGCCATTTTATTTTGAATGTTGCTTCTAGCTGTTTCACCTTTAATTATCATCCTTAGCTTCAAACATATACTTAAACTTTTTGAGAAACAAAAGCATTCACCTTGTACTGATGACCCATTTGATAGAGAAGAATCTTTTCTTTCTGCACTAACTTAAAAGCAACAAGTTATTACTGCCTTTTTTTTTGGTGATCTATGCACTTTGTTTGCATTTAAAACGTTAGATTTCTTCTTTAGACGACTTCAATTCTTGTACGTACCCATCATTATTTTTGCACTTAAAATAGGCATAGAATTGGACCTATTTTAATTTTTAGCTTGAATGCTAGAGTTATTCTTTTGTAAGGAATTATACTTAAACTAAAGAGCAATGTTAAACACATTTAAATTCTCACTACAAATTACTCATTATTCAAACACTAGAATTTTTGCTAGTTGTACTCTTAATGACTTTACACTCCACAATACCCAAAGCGGTCTACCATAGAATAACGAACAATCTTCAAGGCCTGTTTGGATAGCATTTGAAAAGTAACTTGTGTATTTTACATCAGTTCTGTTTCTTCCATGTACAGTTCTGTTATGTTTATTAGTTCAATTCTGTGTTGGTTCAGTTCTATTTTGGTTTGGTAATGCAAGTTCACAGTTTCATTTCAGTTTATTGGTATACGTGACTTTGTATGTTTAGTTCAGTTTATTAGTTCACTTCTCATTTCAGTTTATTTAGCACAATTTTATTAGTTCAGTTTATTAGTTCACTTCTCATTTCAGTTTATTTAGCACAATTTTATTAGTTCACTTCTCATTTCAGTTTATTGGTATACGTGACTCTTCTTACTGACTGCTACCGCCATGGCGATCCTAACACTGGAAAGAGAAACTATACTTACATGGATGCTGTTTATGCATCATCTGTACTATTAGACTCAACTGGATTCTTAAGCTATTCCATATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009386310.1	8.0e-20	PREDICTED: squamosa promoter-binding-like protein 16
Swissprot	B9DI20.1	7.5e-15	Squamosa promoter-binding-like protein 13A
trEMBL	A0A804K7E4	5.7e-20	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G50570.1	70.45	3e-15	76.6	SPL13;SPL13A	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01443	AT5G50570.2	44	13	30	73	96	139	70.45	3e-15	76.6
AfisC5G01443	AT5G50670.1	44	13	30	73	96	139	70.45	3e-15	76.6
AfisC5G01443	AT5G50570.1	44	13	30	73	96	139	70.45	3e-15	76.6

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	35	73	41.8	8.6e-11

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009941	C	chloroplast envelope
GO:0044212	F	transcription regulatory region DNA binding
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	P	anther development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network