result

Gene information

Detail information of AfisC5G01546

Location

Gene	Chr	Start	End	Strand
AfisC5G01546	chr5	292063482	292064903	+

Sequences

CDS

Protein

Gene

>AfisC5G01546
ATGCAAATGGAAACAAGCAAGCTGCTCAGAAGCCATGGTGACATTAGCAGCAACAATAATACCTGTCAAGATATTCAATCACAAGTGGCACCTTTCGTCTCTAAAATTTATCAAATGGTCAATGATCCGAGGACCGACCCTGTAATAAGATGGGGAAGAGAAAATAATAGCTTCTTAGTGTTGAATCCTTCGGATTTTTCCATCCTTTTGCTCCCTCTTTATTTCAAGCATGGCAATTTCTCTAGTTTTGTCCGCCAACTCAATACTTACGTGAGTTCTCTCATCTTTGCCTCATATTTTTGAACAGTAGTCCCGGATATTATAGTTCCAACTTTCAGTTATCAAGAAACTTTAATTTGTTGATGTTTTTTATTTAGTTTAGTTTATTGAACTTACCCTTTGTTTTGTGCATAAGTTCCGTTCATCATAAATCTCCATAAAAGTGATAATATGATTGACTTTTTACTCCTTTAAATTGAAAAAAAAATATGACATACTTCGATTCCTAGATAAAACTTCTTAACTGGTTGAGTTTTGTCGATTTTTAACTATTCTCGGTGCTTCTTTTTTTATTTTTTCACGTTCTATCGTATATCTACAGGGATTCAAAAAGATCGACCCAGACCACTGGGAGTTCGCACATGAGTCATTTCTACGTTGCCAACTGCAACTCTTGCCACTCATAGTAAGAAGAAATAACAGGAAAAATCATGAAAACGAAGAGACGGGGCATGACACAAAAGAAGCATACTATGAAGAAAGCAATGAGAAGTTATTTAAAGAAGTTGTAAAACTACGCAAGGAGCAAAAATTGCTAGAAGAAGAACTGCAAGGCATGAACCGAAGACTTCAAATTACTGAACGAAGCCCGCATCAAATGTATTCATTTCTTGTTAAAGTAGCAGAGGACCCTGAACTGCTACCTAGGCTAATCCTCTCAAAGAAAAGGCGAATATTCGACGAGCAAGAAAAGAAAAGAACATTGTCTGGTACGGTAGTTATGGATAATGAATTTCCTGCTCCATTACCTCAATCTTTTGAGAGAGATTACAGTCTACAGTCAGTGAATTTTGGCATTATAGACGATAACCTTGCTGTTAGTAAAATGGGATTGGAAAATCAGGTATTTTTGCTGCCAGAGCATGGTGAAACAGAGATGAAGAAAGTGGCTTACCCATTTTCATTGTTAGGCCATATGTTTCTCTAGCTTAGTTGGATCATGTTTTTGAATTGAAGTTCTGTTTTAGGAGTTCAATTTGTTGTGGGTTGTTTGGTTAACTGTAATTTATTCGGTTGTCCTATTATAAGCTCACACGCTTTCCCTTGCTTGAGAATGTACATGAATGTACAATTATTTTTCTCTTTATGCATGATTGAGTGTGCACGGAATATGACTTTGACTATGTTCTGTGCAATTAACAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268219.1	2.1e-42	heat stress transcription factor C-1b-like
Swissprot	Q6VBA4.2	7.5e-37	Heat stress transcription factor 2
trEMBL	A0A5P1ESK9	1.5e-42	HSF_DOMAIN domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G24520.1	50.51	5e-51	197	AT-HSFC1;HSFC1	heat shock transcription factor C1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01546	AT3G24520.1	196	81	3	29	219	15	199	50.51	5e-51	197
AfisC5G01546	AT5G16820.2	220	94	4	29	215	25	242	41.36	3e-39	159
AfisC5G01546	AT5G16820.1	220	94	4	29	215	25	242	41.36	3e-39	159

Ortholog group

Species	Genes
Allium cepa	g391331.t1
Allium fistulosum	AfisC5G01546
Allium sativum	Asa0G01036.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	32	121	94.0	5.7e-27

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006970	P	response to osmotic stress
GO:0042802	F	identical protein binding
GO:0009408	P	response to heat
GO:0009644	P	response to high light intensity
GO:0009737	P	response to abscisic acid
GO:0032268	P	regulation of cellular protein metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network