result

Gene information

Detail information of AfisC5G01595

Location

Gene	Chr	Start	End	Strand
AfisC5G01595	chr5	304494998	304496677	-

Sequences

CDS

Protein

Gene

>AfisC5G01595
TACAAGTCCACCTTTGCTCATTTTCCTACTGTTTAGGGGTTTTAGACGGAGAAAGAAGAAAAGATTTATGTCGTTTGAATCCAACAACCATTTATTCAATTATTCTCTAGTTGCTGCTCAAATTTCTTGCTTCTTTTCGTCAAGTTTGATTATAGCTTTCAATTGTTCGCTCATATTGGTTGCTCTCTTCTCTTTTATGAGAAGGAAACCTGAAGGTTTCAAGAGTGATTCGATGCGACTGGAATCGTCGAGGTGAAACTTCCGATTATCTTTTGAATTTTTTGGATGTATAGTATAGCTTGCAGACAGCACCTGCTAACAGCCATACCTTTCTATTTCATAATTAGTTATTTAGAGAAGTATTTTTCATTTTTGTATGTGAACAGTATGTCGGTTCTCTACTAAATATGAAATTTTTATCTATCTGTTTTATTTATGCCGTTAACTACAAATTTTAGGAGAAACCCATGTAATATGAATTTTATGGATTTTTCTTATACTACATACAAGTAACTCCAACTATTCATGAAAATTTGTCTTATCCTCTACCCTGTAGTTCATGATAATCTCATTGTCTACTGCTATTGTGTCATATAGCTGAATTATTGATTCGTATATCTAACAACAGTTTGTAACTTATTTGGCAGGCCTGGATTTGGTGTGAAATATTTCGGATTCCTTCATTTACGTAACTGCTTCTTCATCTTCCTCACTTGATATTGTTTCTGCCTCTCCATTATTTCTCAGCAAAGAAAAGTACCACATCGACTGTTTACTATTTTATAACTGCACGTCAAAAAATGCCTGGTCCACAGAAGCAACTCGTAAACCAAAAGAAAATGCCAAAATCAGTCAGTAAAGGACTCAAAATCCAAAAAATTCGTATTTTATTTGACGACCCTGATTTAACCGACTCATCGAGCGACGACGACGATGATGGAAGAAACATTAAAAAGCGCAAGCGGGTTGTAAAAGAAATACCCGTTTGCCTGTATCAGACCCAACCTAAAACCCCTAAAACCTCATCAGAAGATTCTAAACAGCCATGCAAGTACCGAGGAGTAAGGCAGCGTAAATGGGGGAAGTTTGCAGCTGAGATCCGAGACCCGATAAGGAAAGTGAGAAGATGGCTTGGTACATACGACACAGCTGAAGAAGCCCATCAGGCTTATTCATCTGCGTACAGTTCTCTGCAAGCGGAGAAGGAAGCAATGGCCTCTGGTGCATCTTCAAATTGTTCGGTCCCTTCTCCCTTGTCTGTTCTTGAAAGGGACGGCCAGGATAAGCCGAAGTCTGATATGCTGCAGGAGGGTACGTTGATTGCGGATATATTTGAGGAGGATCCGTTGTCGATGCATAATGTGGATTTCGGGTTTGAAAGTGAGGCATACTTGGTCGGTAATTTGGATGATGATTATTTTGGGCTGGATGATTTGCCGATGTGGGAGCAGCAGTTTGATTGCTCTGATGATTTTTCCTTCTTTGATCATTGTTCATAACTATTATGTCTATTGTTCTAAATTTTAGATGTTGTAATGACCATGTTAGATGCGAGGTAAATTTTTGTCTATTTTTAGTAACTTTATCGCCAACGTTTTATGACTTAAACTATTTCTCATTGTTTTCTTTTCATCTTCTTTAACTCATCCTCCCTATCAGTGGTATGACGCATGATTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	PKA64645.1	8.9e-28	Ethylene-responsive transcription factor ERF118
Swissprot	Q9CA27.1	9.3e-14	Ethylene-responsive transcription factor ERF118
trEMBL	D6MK71	4.8e-31	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68550.1	38.99	7e-20	94.0	CRF10	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01595	AT1G68550.2	159	73	4	24	158	36	194	38.99	7e-20	94.0
AfisC5G01595	AT1G68550.1	159	73	4	24	158	36	194	38.99	7e-20	94.0
AfisC5G01595	AT2G46310.1	161	75	4	27	174	28	172	35.40	1e-17	86.3

Ortholog group

Species	Genes
Allium cepa	g232287.t1
Allium fistulosum	AfisC5G01595
Allium sativum	Asa6G05963.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	83	127	38.2	1.2e-09

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0005829	C	cytosol
GO:0006970	P	response to osmotic stress
GO:0009880	P	embryonic pattern specification
GO:0042802	F	identical protein binding
GO:0009414	P	response to water deprivation
GO:0009733	P	response to auxin
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0010286	P	heat acclimation
GO:0010445	C	nuclear dicing body
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0031053	P	primary miRNA processing
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048825	P	cotyledon development
GO:0070878	F	primary miRNA binding
GO:1900150	P	regulation of defense response to fungus
GO:0090708

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network