result

Gene information

Detail information of AfisC5G01703

Location

Gene	Chr	Start	End	Strand
AfisC5G01703	chr5	321730831	321732260	-

Sequences

CDS

Protein

Gene

>AfisC5G01703
ATGGCGGATATGTTCACAAAGGTAATATTTTTATATTTCTATTGAACATAATGTGGTTTTATACTACATTGCTGTATTTATATTTATCTGTTATGCTCATGTTTGCAACTTACATGCACTAGAATTTATATTATGTTTTGCTATTTCATTTTCAGTCCTTATGGATTTAAATGTGAGAGATATTATATTTGTATTTTGTATTTTTATATGTAGGTAGTTGATTAGTTGAAGGCAAATTCAGGCATATCTTTCAAGCTCCTTTGGATTCGATAAGGATCTATGCTATTGAGTTAGTGATTTGACTTTTGAGTGTGCATGTGCGCGCTCACTCGTGTGCATTCCTGTGTGTCTAGAAAGGCAGAAATATTTTGCCATCTGAGTTCCAATTGTTATGGGATATTTTCTCGAAATCCTAAAATGGGGAAAAAATAAATAAAAAAACTAGTGATATTGATTAGAGTTTGTGTTCACTCATATTTCATCTATTTTATTATTGCATTCATCATCTTGTAATCATATAATGATTTTTTTAAATAGCTTATTCATCCAGTAAATGATCACACTATTTATCTGAATGAGAGTCACAAGAAGCATCTCAAGCAGGAATATGGTAAGTTGTCTACTTGTTGTAATCATCAACATTTTTTTAAATAGGAAGTCTTGATTTATTCCCCTTTTTAGTATTGCAGGTCTTAACATTTCTTTTGCTCCTCTCTTAATAATTATCAGGAATAGAGCCCTGGACGTTTGAGCAACATCTTGGCGAAGCAGTTTTTATTCCAGCAGGATGCCCTCATCAAGTAACAAATAGAAAGGTTAGTGTTCTCTATACTCTATTATTGATTGTTATAGAGGATTTTTGCAATGGTGTAATGAATTCATATTTTTGTTATTTTTTTTTATCATAATTATACATCAGATTATTTTGCTTTTTATTTAAGATGGTACATTTATTGATTTTCTTAGATATTATAGGATGTTTATACTGTACTATTAATAATTTGATCTATTTGTCTCAACTGATGATTTTCACCCTTGATAAATTTGAGAGACTTACTGGAGAAAAACTAGATAGTCTTAAACCAAAGAAAAATAACTAGAAACTAATTTCATTTAATCCTAGAAAAATGTCACTAAAAATATAAGTATAGTCATTATATATGTATTCAATTATACAATATTTTTCTCATTTTTCCTTTTGCGTGGTAGTGTGTGTGTGTGTGTGTATAAAATCTCTGTGTGTGTGTATTCAGTTATGAGTCTAAACTTTTGTTATTGTAATTTTTCAGTCTTGCATTAGAGTAGCCATGGACTTTGTTTCTCCTGAGAGTCTCATTCAATGTGTCAGTTTAACTGAAGAGTTTCAACTGCTTCCAAAAACTCATAGGTCAAAGGAAGACAAATTAGAGGTACATATTGTTTTCAGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	KYP72371.1	3.9e-39	Lysine-specific demethylase 3B
Swissprot	Q9SSE9.1	4.7e-29	Protein JUMONJI 25
trEMBL	A0A151TZC6	2.8e-39	Lysine-specific demethylase 3B

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00990.1	65.98	9e-37	148		Transcription factor jumonji (jmjC) domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01703	AT4G00990.1	97	33	8	104	720	816	65.98	9e-37	148
AfisC5G01703	AT1G62310.1	99	36	6	104	783	881	63.64	3e-35	142
AfisC5G01703	AT1G11950.1	96	36	6	101	757	852	62.50	4e-34	139

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02373.19	JmjC	Domain	12	69	52.5	5.5e-14

Gene Ontology

Accession	Ontology	Name
GO:0000785	C	chromatin
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005654	C	nucleoplasm
GO:0016491	F	oxidoreductase activity
GO:0009555	P	pollen development
GO:0009908	P	flower development
GO:0031490	F	chromatin DNA binding
GO:0032454	F	histone demethylase activity (H3-K9 specific)
GO:0032776	P	DNA methylation on cytosine
GO:0033169	P	histone H3-K9 demethylation
GO:0048366	P	leaf development
GO:0060969	P	negative regulation of gene silencing
GO:0070919	P	production of siRNA involved in chromatin silencing by small RNA
GO:0080188	P	RNA-directed DNA methylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network