result

Gene information

Detail information of AfisC5G01769

Location

Gene	Chr	Start	End	Strand
AfisC5G01769	chr5	338179982	338182386	+

Sequences

CDS

Protein

Gene

>AfisC5G01769
ATTGTTCTGTCAAAACATTAGGAGATAATTACGTTTTAATGTATAACGGTTAAGTAATAAAAGGTTCCTAATTGTCATGATCAAGGTTTAAATTTGTAACATGGACAGATATGACATGTTCCTCTATATAAGATGCACACCATCTCAAACTTTCCTCCCCATTCTATCTTCCTCCATTTAAATCATCGAACAAGAAAATATAATAAAATTAAAAATCCATTTTGCAATTAATGGCAGCATCGTGGACAGCAAAACAAGACAAAACGTTCGAGAATGCGATAGCTGTGTATGATAAAGATACTCCAAATAGGTGGGAGAATGTTGCACGAGCAACAGGAATAACTGCTGAAGAAGCAAAGAGACAGTATGAAATTCTTGAAGAAGATATCAAGCGGATTGAGTCAGGTCGAATTCCTTTGCCTAACTACAGAACTTCTCCTCCCTCCCAGGCCTAGCTAATGAAGGTAGTCATCTTTCATATACGCAACTAATCTATTTACAACCATGATAATGACTATAAATGAGTACAAATAAAACGGATAGCGACATAATCATGATAAATTGGCTATACTGTTTACTTTGATTTGGTGTGAATTTTTGCTTTTTAGTTTTATTCGGTTAACCTTCTTACAGCTGAAAGAAAGACAGGAAAAGAAATGCAGGCATAATAAAGGTATAATTCCCATCGTGAATTCAGAAAAAACCAAGTTGCACATGGTTATTTACAAAATATATTGCTGCCAAAACCTAATTAAACCATTTGGCAAAGCACTGAGATATCAATGGATAAATAAATTAGAAAGAAAATGCAAGATTAAGATCAGATCATTGGTAATAAATATCTTTTTTAGTTATCAACTGATGATTTTATGGCACACTACTGCAAAATTGTACTTGCAGCATCTGTTTAATTGGTATTCAAAGAAACATCATAAGCAAGACACATGTTTTAGAATTAGAAAGTTAAAGGATATATCCCAGGTAAAAGAAATAAGAGCTTTTGCAATTTTTGTTAAAGTTTTATTCTTTCCAACTGTATTTTATTGATAAAATAAACCAGCTTCAAATTTTATGTCCACTGATTTTATTTCCTTAGAAAGAAAACAGTGGAAAGAACATGTTTAAAACAATGGTATACTCAGTTGCCCCGATGAAGACGAAAACAAACGATAGTGGTAAGGTATTAGGTTGTGTAGTTATCCAGACATATATAAAAAGTTGATACCTATATCGGCATAATTACTTCTGAAACTAAAACAAAAAAATCAACCAAATTAGACAACTTGGAATATAGTGTTGGATATATCATTGTATAAGGACAATGTTTGTTGAAAAAAAATCCAGAATGTTGCTAAGCAAAGCTTTCTATCCCTGTCTCTCAGTGAACACTGAGACCACACATGCAATCTCATCCTTATAGTACACTGATTTCACATGGGATCGATCAAATGTCCCCAACACATGTTTCCATAGTTCATGAACCAAAAAAGAGCTTGCCATAGTCATATACATGCTTGTCGTATAATGTTGGAAATTTTACCAATATACGCTTGTTTTAGAAAGTAATAACAAATTTAACCCAGTTTTAAAAATAATTACAGAAATAGACCACTTTTTTTTGGGTCTATTTAGTTGGCGATTTTTCAAAAATCGTCCAAAGAAAAAAGTTTTCCTACGTTGGCGATTTTCTAAAAGTCGCCAACTAAGAAATATGCTATTTTCTTTGGGCGATTTTTGAAAAATCGCCAGTTGGCGACTTTTGAAAAATCGCCAACTAAATAAACCAGAATAAAAAAAAGTTGTCTATTTTTGTAATTATTTTTAAAACTGGGCTAAATTTGTTATTACTTTCTAAAACAAGCCTGTATTGGTAAAATTTCCTATTATGTTCTTTGTCCTAAGGTTTTTTTTTTGTCGTATTCTATTCTATATTTATTTTTATTTTAAACATTTTTTTATTTATCTCTTCTTCTTATATCATGTTACTTCAATTTTTAGAACATAGCAGTTTTACCAAATTGTAAGTTCTTGGTACGGGGAATCAAATCGATGATCATTTGTTTAGTAGCTAAATGTCTTAATAAGACTCTTAACCGAATCAGCTATTGATGTTGCTCGTCAGCAAAACTGAACAAATACAGTTGGATGATTATGATTAGTGGCATATGTGATTCTATATTCATATACTTTATTTTAGCATACATTTAAAGTAAACTTAATTTCTATTACTGATATGTTATTGTTGTTAGATCATTTAAAGTAAAGTTAATTTCTATGCCTGACGTGAATATTTTACTTTTGCTGCAGGATTTAAAGATATAATTAACCAGGCAGAAGTGAAGCATTTATGCATCATGTATCTTGTTTCAATACACTTATGTACTGAAAAAGACGATGTACAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267775.1	4.1e-19	protein RADIALIS-like 3
Swissprot	Q58FS3.1	1.8e-19	Transcription factor RADIALIS
trEMBL	A0A059AND9	3.9e-19	SANT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75250.1	64.62	9e-21	95.1	ATRL6;RL6;RSM3	RAD-like 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01769	AT4G39250.1	66	23	1	5	69	14	79	63.64	9e-21	95.1
AfisC5G01769	AT1G75250.1	65	22	1	5	68	12	76	64.62	9e-21	95.1
AfisC5G01769	AT1G75250.2	65	22	1	5	68	12	76	64.62	3e-20	93.2

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009507	C	chloroplast
GO:0009630	P	gravitropism
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009793	P	embryo development ending in seed dormancy
GO:0009908	P	flower development
GO:0010114	P	response to red light
GO:0010116	P	positive regulation of abscisic acid biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:1901001	P	negative regulation of response to salt stress
GO:1901371	P	regulation of leaf morphogenesis
GO:1905615

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network