result

Gene information

Detail information of AfisC5G01772

Location

Gene	Chr	Start	End	Strand
AfisC5G01772	chr5	338683968	338685562	+

Sequences

CDS

>AfisC5G01772
ATGGATAATTTCAGCAGAAGCCAAGAAGAGAGCATATCCATGCCGGTTCCATTATCGAACTTCAACCCGCAAAACCCTCAAAACCCGATTCGGGTTTCAGCCTTCTCCAGACCCGGAACCGACTTCGGGGACAACCACGATCTGCATCTGGGCAGCGCTCCTCCTGCCCCAGCGGCGCCCAGTCCGGCGTCTAATGTGAGGTACAAGGAGTGTCTGAGAAACCACGCAGCAAGCAATGGAGGTCATGTTCTGGACGGCTGCTGCGAGTTCATGCCCAGCAGCAGCGACGCCCTCAAATGCGCTGCATGCGAGTGCCACCGCAGCTTCCACCGCAAGCACTCCGACGCCGATTCCGGCTCCAGCTCCTACTATCGCTCCAGAGATCGGGTCTCCGTCCCTCTCCTCCTCCCACCTCCTCATCCCGTTCACCACCATCTCCACTCCCATCACCACCAAAAGCAGTTTCCTCCCAGCCCATCCGGCGCTGTATTGGGGTCGTCGTCGATGATGGCGTTCGGAGGAGGGGGGAACAACAGCGGGAGCGGAGCTACAACGGAGTCGTCGAGCGAGGAAGGGTTGAATGCCGGAGGGTGCGAGCCGTTGAGCAGCAGCCACGAGGCAACGCCGATGAGCAGTGCGATGTCGTCGAAGAAGAGGTTCAGGACGAAGTTTTCAGCTGAGCAGAAGGAGAAAATGATGGCATTGGCCGATAAGTTGGGGTGGAGGTTCCAGAGGCAGGATGCAGCTGTGGTGGAGCAGTTTTGCAAAGAAACGGGAATAAGAAGGCAAGTGCTTAAAGTGTGGATGCATAATAACAAGCATTCTATGAGGAAGCAGCAGCAGGAGCAGCTGCAGCATATTATCATTCAGCAGCATCAGCAGCAGCCGCCACCGCCGCAGCCGCAGCAGGTGATTCCACAGCAACAGTCGCCGGTAGGTGAGCAGGTGCAGCAACAAACACCAACGGCGGCAGCGTTATTTGGGCATGCAAGAACTTAA

Protein

Gene

>AfisC5G01772
ATTAGGGATGGGTCATTGTCGGTTCTGCAAATTGCAAATGCCTCATCCTTTGTCTTCTAGTCCTCCTTTCTTCTCCTCCTTTTTAATTCCAACCCCTTAAACACTACTTTCTTATCTTATCACTTGTATATTTATTTTTTAAAAATTGAAAAACCTACAATCTAATTTCATCATAGATAGACCCACCAATTCATTTCTTTCCCCTTTTTAATTCATCCCTATACAGATTGCTGGTGGGAAACCAAACCTAGATACTTATTATTATCATTATTTCTCATACTTCTCCCTATTCCAATTACATTTATTTCGTAAATGTTTTATTTCTCTAATTTCCAACTGAAAAGCTGAAATCTTTTAAAATCGAACAATGGATAATTTCAGCAGAAGCCAAGAAGAGAGCATATCCATGCCGGTTCCATTATCGAACTTCAACCCGCAAAACCCTCAAAACCCGATTCGGGTTTCAGCCTTCTCCAGACCCGGAACCGACTTCGGGGACAACCACGATCTGCATCTGGGCAGCGCTCCTCCTGCCCCAGCGGCGCCCAGTCCGGCGTCTAATGTGAGGTACAAGGAGTGTCTGAGAAACCACGCAGCAAGCAATGGAGGTCATGTTCTGGACGGCTGCTGCGAGTTCATGCCCAGCAGCAGCGACGCCCTCAAATGCGCTGCATGCGAGTGCCACCGCAGCTTCCACCGCAAGCACTCCGACGCCGATTCCGGCTCCAGCTCCTACTATCGCTCCAGAGATCGGGTCTCCGTCCCTCTCCTCCTCCCACCTCCTCATCCCGTTCACCACCATCTCCACTCCCATCACCACCAAAAGCAGTTTCCTCCCAGCCCATCCGGTAAGAACGACAAAATTAAACTAATTGATACAGTTTTATTTAATTTAACTCGCTTCTTCTTAATAAAGGCGCTGTATTGGGGTCGTCGTCGATGATGGCGTTCGGAGGAGGGGGGAACAACAGCGGGAGCGGAGCTACAACGGAGTCGTCGAGCGAGGAAGGGTTGAATGCCGGAGGGTGCGAGCCGTTGAGCAGCAGCCACGAGGCAACGCCGATGAGCAGTGCGATGTCGTCGAAGAAGAGGTTCAGGACGAAGTTTTCAGCTGAGCAGAAGGAGAAAATGATGGCATTGGCCGATAAGTTGGGGTGGAGGTTCCAGAGGCAGGATGCAGCTGTGGTGGAGCAGTTTTGCAAAGAAACGGGAATAAGAAGGCAAGTGCTTAAAGTGTGGATGCATAATAACAAGCATTCTATGAGGAAGCAGCAGCAGGAGCAGCTGCAGCATATTATCATTCAGCAGCATCAGCAGCAGCCGCCACCGCCGCAGCCGCAGCAGGTGATTCCACAGCAACAGTCGCCGGTAGGTGAGCAGGTGCAGCAACAAACACCAACGGCGGCAGCGTTATTTGGGCATGCAAGAACTTAATTTGGTATTCTTAATAAGTAGGTATTATTTATGTTGAATTAGCTTTTATTTGTAATTTTTAGCTTCATTTCTCCTATTAGTTGTTGATTAAGATGTTGAAAAAATTGTGGCTAGTTTATGATTTAGGACACCTATGATTTTAAGGGTTTATTGAATTGAGA

Functional annotation

Database	accession number	e-value	annotation
nr	RRT50980.1	5.4e-34	hypothetical protein B296_00024177
Swissprot	Q9SB61.1	1.3e-29	Protein MATERNAL EFFECT EMBRYO ARREST 68
trEMBL	A0A444F632	3.9e-34	ZF-HD dimerization-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24660.1	43.30	1e-41	167	ATHB22;HB22;MEE68;ZHD2	homeobox protein 22

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01772	AT4G24660.1	224	70	7	64	279	45	219	43.30	1e-41	167
AfisC5G01772	AT2G02540.1	222	99	8	66	279	85	284	41.89	1e-39	160
AfisC5G01772	AT1G14440.2	229	98	7	66	285	88	286	40.17	3e-38	155

Ortholog group

Species	Genes
Allium cepa	g475720.t1
Allium fistulosum	AfisC5G01772
Allium sativum	Asa5G01659.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04770.9	ZF-HD_dimer	Family	65	114	83.9	6.3e-24

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009737	P	response to abscisic acid
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048316	P	seed development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network