Detail information of AfisC5G01791


Location
GeneChrStartEndStrand
AfisC5G01791chr5341168699341179359+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010924372.11.2e-24high mobility group B protein 14
SwissprotO64702.22.4e-19Nucleosome/chromatin assembly factor group D 14
trEMBLA0A6I9RD858.3e-25high mobility group B protein 14

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G34450.162.501e-27 118HMG-box (high mobility group) DNA-binding family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag159655.t1
Allium fistulosumAfisC5G01791
Allium sativumAsa5G01668.1
Arabidopsis thalianaAT2G34450.1; AT2G34450.2
Oryza sativaLOC_Os01g47600.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00505.16HMG_boxDomain4511363.51.7e-17

Gene Ontology
AccessionOntologyName
GO:0000785Cchromatin
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0006333Pchromatin assembly or disassembly
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0010197Ppolar nucleus fusion
GO:0030527Fstructural constituent of chromatin

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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