result

Gene information

Detail information of AfisC5G01817

Location

Gene	Chr	Start	End	Strand
AfisC5G01817	chr5	345342727	345344106	+

Sequences

CDS

Protein

Gene

>AfisC5G01817
ATGACTGTCCATGTTACAGATCTTGTATACAGGTAAATTAATTCTTTGCATATGCTTAGATTTGTGTTACTCCATGTTGTTCTTTAGTTTGTTTGGTTTGTTCCTAATTTTTAATCTGTTTTAGATGCTTGGAAAATTCTCAAGAACATAAGGAAATGTATATTTCTATTATATATATGAAGAAGATTAATGGCTCTCGATCCATTTAGCAATGGATGGTTTATGAATAGATATTTTTTTCCAATCCAAATTCAGTTCATGCAAATTTGAGGAGCAAGCAAATCCTTTCTTGAATCAGAATACTTAATGACAATTTTTAGTATGTGCCTTTAAGTTCAGTTTCTACTCAAAGTAATCCTTCCTCTTTAAGTACAAATATTAGTAGTATCACTACAAATAGCAACAATATTATTAGCAATAGGAACAATACTCATAGTAATGATATCGAATCACCTGAGGATTCTAAAGTTTTATCATATATAGTTCTTAGTTACATTAGCAAAATGTTAATGGAGGAAGATGTGGATGACAAGGTTAATCTTATGTTTCAAGAAGAATCTATTATTGAATTAGATGAAAAACCTTCTTATGATATTTTAGGCGAGAAATATCCACCATCCGATAGTAGTATTAGCAAAAATTTCATTACTAAGGCAGAATCCTATCATAATTCATTAAATAATTCTCATGATAAGTTTATGCATATACTTGGAGAGAGCAGTCTTGCCTAGCAATTTAGAAAAGGAGCTGAAGAAGGATGTAAATTTCATCCTAGTAATAATAAGCTTGTTATTGGCGGTGGGTTGCCTACTAATTTGTTGGTTATGTGAAGGCTGAAGGTATCAAGTTCAAGTACCAAAAGGCAGAGAAAAGACAAATATGGAGGATTTGGATCAAATCAAAGGCAAGAGTGTAAAGCAAACTGCAGTTTCTCCATCTTATGAAGAAACCATTCAAACTCTAATGTTTGATGTTATATTATTATGCCAAAAAGGAAAGAAGTATAAAAACAGACTAGATGCCCTAAGAGAAGCAATTCAGAAAAGCAGGATTTCATAAAATAGTGCCAATGTCTCAAATGGCAGGGCAAGAGTAAAGAAGCAACATAAGAAAGAAGTAGTGGATTTAAGAACATTGTTGGTGCATTGTGCTCAAACAGTAGCTGCGGATGATCGAAGAAGTGCAAATGAATTATTAAAGAAAATCAAACAATATTCTTCACCATTTGGCGATGGTTGTCAAAGGCTGGCACATTGTTTTGCAGATGGACTAGAAGCTCGATTAGCTGGAACTGATAGCCAAATCTACCATTCCCCTGTTACTAAAAGAACAAATGCTACTGACATATTAAAAGCATATCAGCAGTATTTAGTAGCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	QDL88530.1	2.4e-36	scarecrow-like protein 9-like isoform X3
Swissprot	O80933.1	5.3e-28	GRAS family protein 13
trEMBL	A0A515HGH3	1.8e-36	Scarecrow-like protein 9-like isoform X3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G37650.1	69.32	1e-31	131		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01817	AT2G37650.1	88	27	19	106	338	425	69.32	1e-31	131
AfisC5G01817	AT1G07530.1	88	33	19	106	387	474	62.50	5e-29	122
AfisC5G01817	AT2G29060.1	89	39	18	106	311	399	56.18	2e-26	114

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	25	103	58.8	3.9e-16

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0010200	P	response to chitin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network