result

Gene information

Detail information of AfisC5G01906

Location

Gene	Chr	Start	End	Strand
AfisC5G01906	chr5	358651183	358652552	+

Sequences

CDS

Protein

Gene

>AfisC5G01906
TTGTCTTTGAAATTCTAAATATGGTATGTTTGGTTAGATGGGAGCCAATGGTGATTGAGTACTTTCGTGCGTGTGTACATGGTCAAGCAATGCACATGTATCTCTCTTAATCACAACTGTATCCCTGTAACTATAAAGAGTAACATATCTAAACTGGCTGTGCGTATAGTTTTAGTATACATGCTACTATTAAGTACCTTCAAGTTTGCCTATCTTTACTGAATTGATCAGTGATAATATTTATATCAGTTTCTCTATAAATCCCAACCCACCCAAAAATATCTATCTTGTCCCTCCAATTCTCTCATCTCTGCTATATACATAATCATACTCAAAAAGCATGGAGAAGATAATATGCACCAATAGCAGTGGCGGTAGTGGTGGTGGAAGCAGCAGCAGCAGCAACATACAAGAAGAAGTCAGAAAAGGACCATGGACAATGGAAGAAGATCTCATCCTTATTAACTACATCGCTAATCACGGAGAGGGTAACTGGAACACTTTGGCTAAGTCTGCAGGTATATGTATATTCTACACACATATTAAATTTTTATAGCTTTTCTTTTATCGATCAAGAATCAATATTGATATTTTTCTTGAATTTATCTATAAGGTTTGAAGCGTACTGGAAAGAGCTGTCGGTTGAGGTGGCTAAACTATCTGCGGCCAGATGTGCGCAGAGGAAATATCACACCAGAGGAGCAGCTTATTATTATGGACCTGCATTCTAAATGGGGTAATAGGTGAGCTATCTTGCATTTTGGTTTGGTTATTCAGATGAATTCAGGTAGTCTAACTATTTTGTAAATTCATCCCTGAGGTGGTCGAAAATTGCAAGGCAGCTACCAGGGAGAACTGATAACGAGATAAAGAATTTCTGGAGGACTAGAATGCAAAAGAAGCCAACGCAGGGTGAGCATTTTGATAACCAGTACGAGCCTCTGAATCAGATGGTGATGGATGATGCTGCTGGTACCAGCAGCTTCAATGGGATCGATGAATACAGTAATGGGACTCAAGATAACTATCCAATGAATCCTAATGTTGGTGGTGTTGATGCTTTTGGTTCAAATGCTCCTGATGTTACTGCTGATAACTTTTGGAATGTTGAGGATTACTGGTTCGTGCAACCTCCTAACGGCGCTGATCACTGAAACTGAAGACATAATATGCATAGCATCTTCGCAGCAAGCGTAGGTCGAAAATAAAGGTAATTGCTGTAATTGAAGTACCCTTGTAATGTATGCTACTATGCATCCTGTGCATTATGAAACTTATTTTCTACTATTACTTATCTATCCATTATAAGCTTGATTGATGTTTGTTCACAGATTCAAAGTAGTAGTTTTAACAAGTATTTGTTACACGTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268272.1	7.3e-69	myb-related protein 305-like isoform X1
Swissprot	P81396.1	1.3e-57	Myb-related protein 340
trEMBL	D6MKP7	1.5e-68	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G27810.1	56.73	8e-58	219	ATMYB21;ATMYB3;MYB21	myb domain protein 21

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01906	AT3G27810.1	208	55	4	24	203	17	217	56.73	8e-58	219
AfisC5G01906	AT5G40350.1	200	71	3	26	210	16	213	56.00	1e-57	219
AfisC5G01906	AT3G01530.1	199	86	3	17	213	13	204	52.26	5e-52	200

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	29	76	62.8	2.2e-17
PF00249.28	Myb_DNA-binding	Domain	82	125	53.6	1.6e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010053	P	root epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0043565	F	sequence-specific DNA binding
GO:0048629	P	trichome patterning
GO:0080086	P	stamen filament development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network