result

Gene information

Detail information of AfisC5G01957

Location

Gene	Chr	Start	End	Strand
AfisC5G01957	chr5	368809157	368811658	+

Sequences

CDS

>AfisC5G01957
ATGGGCTCTCCATCTGAACTTACCCTAGATTACAAACCAGCTCCACCAACCTACCCTTCAATCCAAAATGATCAGCAAACCCATGATAAACTCGAGGACTTTCTTGCCCGTCTCGAAGAAGAAAGGCACAAGATCAATGCATTCAAGCGCGAACTTCCTTTATGCATGCAGCTTCTTAACAACGCCTTGGAGACATACAAGAAACAGTTAGAAGCTTACCAAACTAACCAAGAACCAAAACCGGTGCTTGAAGAGTTCATTCCTGTAAGCAACATGAGCATAAATGCACCAGAGAAGTCTCCTGTTGTTACAGTTCAATCAGAGAAGGCCAACTGGATGGTGTCAGCACAACTATGGAGCCCTTCTAGTGCTGATAATAATAACAATAATAATTCAATGGAGAAACAAACAAAACTTGAACTAGACTCAAAGCAAAGGAATGGTGGAGCTTTCTTACCCTTCTCCAAAAAGAGGAGTAACAGTGGATCTCTTGTGCCAGAATTAGGCCTTGGTAGTCCTTCACTTGAGAATAAATGCCTAGAGAGTGATGGAAATACCAGTAAAAGCATGACAGTATTTCAAGAACAACAGCCAAAAGGAGGTAGCAGTACGAGTAACGGTAATAACAATGAAGGAAATCATGGAGGACATAGAAAAGCTCGTAGGTGTTGGTCTCCTGATTTGCATAAAAGATTTGTTAATGCTCTTCAAAAGTTGGGTGGCTCTCAAGTTGCTACTCCAAAGCAGATAAGAGAGCTGATGAAAGTTGATGGGCTTACAAATGATGAAGTCAAAAGCCACTTGCAGAAATATAGGCTTCATACAAGAAGACCGATACAGCCGCCCCAACCAGCATCAACGAGTGCACCACAACTGCTGGTCCTAGGTGGCATTTGGGTCCCACCAGAATACGCCACATCAGCAGGTACGAATACTGTTTGCCCTACAATTTACGGAACATCCCATCCAGGTGGGACCCACTACTCCTTCCCTCATCATGACTACTACGCCTCGCCACCTCAGCACCACCTGCACTGCCCAGCTGTCACCTCCATGGCTCCCACTGCGTACAAGGCACAAGTTCGTTCCCCATCGTCAGAGCTCAGAAGCAGTGGAGCCCGCTCTGAGAGCTTTGAGGAAAGCAAGGAAAGTGAAGGTAATGAGGAAGATGAAGATCAAGAAGAAGAAGAAGAATGTGACTATGAGAATGACAAGGCAATTGTTCCGTTAGTTAACAATAACTAG

Protein

Gene

>AfisC5G01957
GTGATCCCTCACATTATGTTCACAACTTCATTTGTTTCCACTTCCTTATGTAAAGAAAAGAAATTGCTCACATTACATATAACCTCACAAGCTAGTTACCAGTCTAGAAAAATATGGGCTCTCCATCTGAACTTACCCTAGATTACAAACCAGCTCCACCAACCTACCCTTCAATCCAAAATGATCAGCAAACCCATGATAAACTCGAGGACTTTCTTGCCCGTCTCGAAGAAGAAAGGCACAAGATCAATGCATTCAAGCGCGAACTTCCTTTATGCATGCAGCTTCTTAACAACGGTATGCGCTTACTATTCATCTGTTTGGGTTAATAACTTGACCTACATATTTTAATTAACTTTCTATTCATATGATAATATGCGTGTAGCCTTGGAGACATACAAGAAACAGTTAGAAGCTTACCAAACTAACCAAGAACCAAAACCGGTGCTTGAAGAGTTCATTCCTGTAAGCAACATGAGCATAAATGCACCAGAGAAGTCTCCTGTTGTTACAGTTCAATCAGAGAAGGCCAACTGGATGGTGTCAGCACAACTATGGAGCCCTTCTAGTGCTGATAATAATAACAATAATAATTCAATGGAGAAACAAACAAAACTTGAACTAGACTCAAAGCAAAGGAATGGTGGAGCTTTCTTACCCTTCTCCAAAAAGAGGAGTAACAGTGGATCTCTTGTGCCAGAATTAGGCCTTGGTAGTCCTTCACTTGAGAATAAATGCCTAGAGAGTGATGGAAATACCAGTAAAAGCATGACAGTATTTCAAGAACAACAGCCAAAAGGAGGTAGCAGTACGAGTAACGGTAATAACAATGAAGGAAATCATGGAGGACATAGAAAAGCTCGTAGGTGTTGGTCTCCTGATTTGCATAAAAGATTTGTTAATGCTCTTCAAAAGTTGGGTGGCTCTCAAGGTAATCTCTTCTAGTTATATTATTAATTCAAAGTTTGTGAGCATGAGCAGATGAAATTCAATAACTGGGTAATCACAATCAGTCCTCTAGTAGGCATTTATATATACTTTTATTTTTGTTGGACAAGATATACGTGCTGTATATTTCACAGGAATACCAAGTCAGTGTAGTAGTAATAGTATTTGCGTGGGCTAATAATTGCATATAAGCTTGTGTTTTTAAGTTTGTTATTTTCCTCTTTGCTTTCATTGTAAAGTTTCACATAATAGCTTGATCATTACTGTTCACGTTCTAGGTCTGTTACCAAATGGAGTTTACTTTATAAATACTTTTTTCTGTTGGTCAGTCTATTCTATATTGACATAAAAATTAAGCTAGTGTAGTATATGTGAGGCTTCATAATTACATGGCTACTTGCCTCCTTCAACGTGTTTTCTTCCTTTTTCTTTTTTCATTCATTGCACACATTTGATTTGTCTTGTACCCGCAAAGTTTCACATAATAACTTTGATCATTGCAGTACATGTTCATCCAATCATATGTCAATGTTAATCAACTTCTCACTTTGATTTTTTGAATTACAGTTGCTACTCCAAAGCAGATAAGAGAGCTGATGAAAGTTGATGGGCTTACAAATGATGAAGTCAAAAGCCACTTGCAGGTTTAATAATCTTTATTTCTTGTAAACATGCAACCCACTTATTGTTCAATTATACCTACAACAGCCAGAGAATGTAAAGAAAAAAGAAAAGAAGAGAAAGTAATGATGAAGTGGCTCAATTATTACCAACTATTAATCATCAGATAAATCATTTAATTCATAAAATAGCTTATCCAGTTGATCTTTTTCAGATTTGTCATCTGAATTATTTGTTTGAAACTATATATATCAGAAATATAGGCTTCATACAAGAAGACCGATACAGCCGCCCCAACCAGCATCAACGAGTGCACCACAACTGCTGGTCCTAGGTGGCATTTGGGTCCCACCAGAATACGCCACATCAGCAGGTACGAATACTGTTTGCCCTACAATTTACGGAACATCCCATCCAGGTGGGACCCACTACTCCTTCCCTCATCATGACTACTACGCCTCGCCACCTCAGCACCACCTGCACTGCCCAGCTGTCACCTCCATGGCTCCCACTGCGTACAAGGCACAAGTTCGTTCCCCATCGTCAGAGCTCAGAAGCAGTGGAGCCCGCTCTGAGAGCTTTGAGGAAAGCAAGGAAAGTGAAGGTAATGAGGAAGATGAAGATCAAGAAGAAGAAGAAGAATGTGACTATGAGAATGACAAGGCAATTGTTCCGTTAGTTAACAATAACTAGATTTAGTTGAGTTTAGCTTAATAAGTTAATAATTTTCTAGTTAGGGTTTAGGGCTTTAGAACTGCATAAGATGGTAAGTGCAATGGATGGATGTTTCTTGATTCGTTATTATGTATTGTGTTGTGTAGAAACAGTTGGTAGGTTGGCTTCTGCTGCCCAAAAAGATGAATGTAAAAGTTGTCGCGTGTCTTGTGACTTCATGCCATTTATAGGATGTAGCCTGTTATGAAAATGAAATCT

Functional annotation

Database	accession number	e-value	annotation
nr	THU49143.1	9.8e-86	hypothetical protein C4D60_Mb06t06450
Swissprot	Q9ZQ85.2	4.0e-68	Protein HRS1 HOMOLOG 4
trEMBL	A0A4S8IL15	7.1e-86	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03500.1	50.57	2e-78	290		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01957	AT2G03500.1	348	123	12	1	318	1	329	50.57	2e-78	290
AfisC5G01957	AT1G68670.1	305	137	8	30	301	13	301	39.02	3e-50	196
AfisC5G01957	AT1G25550.1	308	129	9	26	301	13	294	39.29	2e-47	186

Ortholog group

Species	Genes
Allium cepa	g333380.t1
Allium fistulosum	AfisC5G01957
Allium sativum	Asa0G04073.1; Asa3G04954.1
Arabidopsis thaliana	AT2G03500.1
Oryza sativa	LOC_Os01g08160.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	221	272	31.7	1.1e-07

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009409	P	response to cold
GO:0009536	C	plastid
GO:0009737	P	response to abscisic acid
GO:0048519	P	negative regulation of biological process
GO:0051716	P	cellular response to stimulus
GO:0099402	P	plant organ development
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network