Gene information

Detail information of AfisC5G02068

Location

Gene	Chr	Start	End	Strand
AfisC5G02068	chr5	390852269	390852910	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	ONK58065.1	2.6e-50	uncharacterized protein A4U43_C09F7750
Swissprot	Q9M384.1	8.8e-11	Protein SHOOT GRAVITROPISM 1
trEMBL	A0A5P1E988	1.9e-50	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54220.1	33.33	1e-11	66.2	SCR;SGR1	GRAS family transcription factor

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G02068	AT3G54220.1	138	78	3	84	207	298	435	33.33	1e-11	66.2
AfisC5G02068	AT2G01570.1	108	62	2	73	178	218	318	34.26	2e-11	65.9
AfisC5G02068	AT2G04890.1	140	87	3	79	207	53	192	30.00	2e-11	65.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	76	180	73.3	1.6e-20

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006808	P	regulation of nitrogen utilization
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010187	P	negative regulation of seed germination
GO:0010218	P	response to far red light
GO:0010233	P	phloem transport
GO:0044212	F	transcription regulatory region DNA binding
GO:0033206	P	meiotic cytokinesis
GO:0042176	P	regulation of protein catabolic process
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0099402	P	plant organ development
GO:2000033	P	regulation of seed dormancy process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network