result

Gene information

Detail information of AfisC5G02102


Location
GeneChrStartEndStrand
AfisC5G02102chr5396620783396634336-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010941745.10.0e+00probable ATP-dependent DNA helicase CHR12
SwissprotF4J9M5.10.0e+00Protein MINUSCULE 1
trEMBLA0A8B7CVX20.0e+00probable ATP-dependent DNA helicase CHR12 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G06010.169.930.01395ATCHR12;CHR12Homeotic gene regulator

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag505965.t1; g505967.t1
Allium fistulosumAfisC5G02102
Allium sativumAsa6G05897.1
Arabidopsis thalianaAT3G06010.1; AT5G19310.1
Oryza sativaLOC_Os05g05230.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily401675236.72.7e-70
PF00271.28Helicase_CFamily69580868.93.9e-19
PF14619.3SnACDomain88896742.66.2e-11

Gene Ontology
AccessionOntologyName
GO:0007059Pchromosome segregation
GO:0000086PG2/M transition of mitotic cell cycle
GO:0000182FrDNA binding
GO:0036310Fannealing helicase activity
GO:0000792Cheterochromatin
GO:0000978FRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980FRNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001102FRNA polymerase II activating transcription factor binding
GO:0001105FRNA polymerase II transcription coactivator activity
GO:0001164FRNA polymerase I CORE element sequence-specific DNA binding
GO:0001570Pvasculogenesis
GO:0001832Pblastocyst growth
GO:0001835Pblastocyst hatching
GO:0001889Pliver development
GO:0002039Fp53 binding
GO:0003151Poutflow tract morphogenesis
GO:0003281Pventricular septum development
GO:0003407Pneural retina development
GO:0003678FDNA helicase activity
GO:0003714Ftranscription corepressor activity
GO:0006334Pnucleosome assembly
GO:0016020Cmembrane
GO:0007010Pcytoskeleton organization
GO:0005829Ccytosol
GO:0005524FATP binding
GO:0005615Cextracellular space
GO:0005654Cnucleoplasm
GO:0005667Ctranscription factor complex
GO:0005700Cpolytene chromosome
GO:0005719Cnuclear euchromatin
GO:0005726Cperichromatin fibrils
GO:0005730Cnucleolus
GO:0005987Psucrose catabolic process
GO:0006261PDNA-dependent DNA replication
GO:0006284Pbase-excision repair
GO:0006302Pdouble-strand break repair
GO:0006337Pnucleosome disassembly
GO:0006346Pmethylation-dependent chromatin silencing
GO:0006368Ptranscription elongation from RNA polymerase II promoter
GO:0007070Pnegative regulation of transcription from RNA polymerase II promoter during mitosis
GO:0007126Pmeiotic nuclear division
GO:0007403Pglial cell fate determination
GO:0007517Pmuscle organ development
GO:0043066Pnegative regulation of apoptotic process
GO:0008284Ppositive regulation of cell proliferation
GO:0008285Pnegative regulation of cell proliferation
GO:0008623CCHRAC
GO:0009414Presponse to water deprivation
GO:0009611Presponse to wounding
GO:0009651Presponse to salt stress
GO:0009826Punidimensional cell growth
GO:0009908Pflower development
GO:0010078Pmaintenance of root meristem identity
GO:0010104Pregulation of ethylene-activated signaling pathway
GO:0010199Porgan boundary specification between lateral organs and the meristem
GO:0010231Pmaintenance of seed dormancy
GO:0010424PDNA methylation on cytosine within a CG sequence
GO:0010492Pmaintenance of shoot apical meristem identity
GO:0015616FDNA translocase activity
GO:0016514CSWI/SNF complex
GO:0016584Pnucleosome positioning
GO:0016586CRSC complex
GO:0016589CNURF complex
GO:0016590CACF complex
GO:0019233Psensory perception of pain
GO:0030177Ppositive regulation of Wnt signaling pathway
GO:0030198Pextracellular matrix organization
GO:0030216Pkeratinocyte differentiation
GO:0030308Pnegative regulation of cell growth
GO:0030334Pregulation of cell migration
GO:0030900Pforebrain development
GO:0030902Phindbrain development
GO:0030957FTat protein binding
GO:0031055Pchromatin remodeling at centromere
GO:0031213CRSF complex
GO:0031492Fnucleosomal DNA binding
GO:0031496Ppositive regulation of mating type switching
GO:0032403Fprotein complex binding
GO:0035041Psperm chromatin decondensation
GO:0035060Cbrahma complex
GO:0035063Pnuclear speck organization
GO:0035076Pecdysone receptor-mediated signaling pathway
GO:0035092Psperm chromatin condensation
GO:0035116Pembryonic hindlimb morphogenesis
GO:0035887Paortic smooth muscle cell differentiation
GO:0035904Paorta development
GO:0042148Pstrand invasion
GO:0042752Pregulation of circadian rhythm
GO:0042766Pnucleosome mobilization
GO:0043044PATP-dependent chromatin remodeling
GO:0043388Ppositive regulation of DNA binding
GO:0043923Ppositive regulation by host of viral transcription
GO:0043966Phistone H3 acetylation
GO:0044109Pcellular alcohol catabolic process
GO:0045111Cintermediate filament cytoskeleton
GO:0047485Fprotein N-terminus binding
GO:0048562Pembryonic organ morphogenesis
GO:0048730Pepidermis morphogenesis
GO:0048813Pdendrite morphogenesis
GO:0050681Fandrogen receptor binding
GO:0051091Ppositive regulation of sequence-specific DNA binding transcription factor activity
GO:0060318Pdefinitive erythrocyte differentiation
GO:0060347Pheart trabecula formation
GO:0060766Pnegative regulation of androgen receptor signaling pathway
GO:0060976Pcoronary vasculature development
GO:0061412Ppositive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation
GO:0061587Ptransfer RNA gene-mediated silencing
GO:0061626Ppharyngeal arch artery morphogenesis
GO:0070182FDNA polymerase binding
GO:0070307Plens fiber cell development
GO:0070577Flysine-acetylated histone binding
GO:0070615Fnucleosome-dependent ATPase activity
GO:0071564CnpBAF complex
GO:0071565CnBAF complex
GO:0090537CCERF complex
GO:1900036Ppositive regulation of cellular response to heat
GO:1900150Pregulation of defense response to fungus
GO:1900189Ppositive regulation of cell adhesion involved in single-species biofilm formation
GO:1901838Ppositive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:1902661Ppositive regulation of glucose mediated signaling pathway
GO:1902895Ppositive regulation of pri-miRNA transcription from RNA polymerase II promoter
GO:1904837Pbeta-catenin-TCF complex assembly
GO:2000022Pregulation of jasmonic acid mediated signaling pathway
GO:2000134Pnegative regulation of G1/S transition of mitotic cell cycle
GO:2000177Pregulation of neural precursor cell proliferation
GO:2000219Ppositive regulation of invasive growth in response to glucose limitation

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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