Gene information

Detail information of AfisC5G02196

Location

Gene	Chr	Start	End	Strand
AfisC5G02196	chr5	416829422	416830360	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020681728.1	4.7e-103	transcription factor MYB80
Swissprot	Q7XQN1.2	5.6e-93	Myb-related protein 80
trEMBL	A0A8T3B5C9	2.6e-103	Transcription factor MYB80

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G56110.1	89.88	4e-91	331	AtMYB103;ATMYB80;MS188;MYB103;MYB80	myb domain protein 103

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G02196	AT5G56110.1	168	17	0	1	168	1	168	89.88	4e-91	331
AfisC5G02196	AT4G05100.1	129	39	1	1	128	1	129	68.99	1e-52	203
AfisC5G02196	AT5G15310.1	128	39	0	1	128	1	128	69.53	3e-52	201

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	67.1	9.8e-19
PF00249.28	Myb_DNA-binding	Domain	68	110	50.9	1.2e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048658	P	anther wall tapetum development
GO:0052545	P	callose localization
GO:0055046	P	microgametogenesis
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network