result

Gene information

Detail information of AfisC5G02244

Location

Gene	Chr	Start	End	Strand
AfisC5G02244	chr5	426075733	426077567	+

Sequences

CDS

Protein

Gene

>AfisC5G02244
ATGGCAATGTTGGTGAGCAGGCAGGGGCAAAATGGGAACAATCAGCAGCAGATAGACGCAGGAAAGTACGTTAGGTACACACCTGAGCAAGTAGAAGCTCTCGAAAAGGTGTACAGTGAATGCCCAACACCTAGCTCAATTCGAAGACAGCAACTCATTCGAGAGTTTCCTATCCTGTCTAATATCAAGCCAAAACAAATCAAAGTTTGGTTCCAGAATCTAAGGTACTATAAAGCTCAAACATTTATCATTTTTAAAATTTGCTTTTGGTTATAATTGTACCTGTTTGAATTGATCGTATATGAATTCTAGTTTTCCTTCTAATCCTATTATTGTTTCGGAAGTATTCTATGAAAAACAGTATATTTTAGCTCATCATACGACTTATTCCAGTCAACTAAATTATTGTACAATAGCTCCCTTTTATATTAGTTTGTGTTTTCAAAAATATTCATGTAAAAAGAAGGGTACGAATTCCAGTTATTGAAGCAAATAAATCCTTCGTGCAAAAAAACATTATTTTCATACTATAGTGTGGAACTTGAATCTTGAGTGAAATTGTATATAACGCTTTACAATTTACACATAAATTTCGCGAGAAACAAAGAAAGGAGGAATCTGATCTTTAGAATGTGAACAGAAAGTTAGATGCAATGAACAAGCTATTGATGGAGGAAAATGACCGCCTTCAGAAACAACTGTCTCATCTTGTTTATGAAAATGGCTACATGCGCCAAACGAGTGCACACTGTAAGAATCATATATTCTTTACCATTTTCTTCAAAACATGAAATCTTAGTATTTTATATAAAAAAATATATATTATTCAATTCAATGTCTAAGGCAAACAAGTTACTTGGTTCATATACTAATACGAACATTCTGTTGTCATATCACATTGATTACAAGTGAACTAAATAAAGAGTAAGCAAAGTTTGTTATTGCTTTGTAACAGTACTGTTCTGTAACTTTATTCCAACTACATACAGGTTAATGTAGACAATTTCTAACGCCCCACATTGAAAAATATATATGCAGACTGCTGTTGCTACTACAAATATTATATCTTTAGGTTTACCTAATCTGTATCTACTCTAACAATTATACAGACTATGATAAACTTCATGAGCATTATGAGCAAGTTTCCAAACTAGGAACGATTGCTCCTCTTTAATATACGTGTTTGTTGCATTGTATAGTTCAACACAGTGCTTTCATATAATATTTGGGCAATGTGTGTTATGCTGTATACCTCAACACAACTATGATATTAGAGATGACTGAAACTTTATATTTGCCTATGTTTTAGATCCTGTCTAATTATTTCCTTATATCTTGAGAGAAGATATATTAGGATTAGACCGAAGTATAAGAACCTAGAAGCAAGGTATTAAAACCCAAGTGAGGATATCAATAACCATTGCTGCATATATACCCATAGCTATAAACATAGATGAAATTTCCTTATTTTTCTTATGTTTGTGTGTATGTGGTAGGAGGCATAATATTTAAGTAGAATTGTATTAAGAAAGGCATCAATCACATTATATTTGAGTTTAGAGATTAATGAATGTTAATCCTCGAAATCGTTAGACAGTTAGCTTTTGGTGCATATATTATAATCTAACGGTATTTTCCCTTAGAGTGTCTTTTTCTTAGTTTTTCATTTAGGTTTGGAACAAGAAAAAGAATAACTGGTTATTCTATTATTCTGTCTTATATCAAGCAAACCATGATATTTCTACATTATTTTTAATGTCGTAATTGCTTATTTGATTATTGCAGATGTTAGAAGAAAATATCAAAAGCAAAGCAAGATGAACTCAATTGTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273236.1	1.8e-38	homeobox-leucine zipper protein HOX32-like
Swissprot	A2XK30.1	6.2e-36	OsHox32
trEMBL	I0IUI5	1.3e-38	Class III homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32880.1	67.24	3e-40	159	ATHB-8;ATHB8;HB-8	homeobox gene 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G02244	AT4G32880.1	116	21	1	9	107	2	117	67.24	3e-40	159
AfisC5G02244	AT2G34710.1	126	27	2	3	107	2	127	61.90	1e-39	157
AfisC5G02244	AT1G30490.1	106	16	1	19	107	18	123	68.87	6e-38	152

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	23	75	47.6	1e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008289	F	lipid binding
GO:0009880	P	embryonic pattern specification
GO:0008284	P	positive regulation of cell proliferation
GO:0009733	P	response to auxin
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009965	P	leaf morphogenesis
GO:0010067	P	procambium histogenesis
GO:0010072	P	primary shoot apical meristem specification
GO:0010075	P	regulation of meristem growth
GO:0010089	P	xylem development
GO:0045597	P	positive regulation of cell differentiation
GO:0048263	P	determination of dorsal identity
GO:0048364	P	root development
GO:0080060	P	integument development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network