result

Gene information

Detail information of AfisC5G02454

Location

Gene	Chr	Start	End	Strand
AfisC5G02454	chr5	464855371	464858101	+

Sequences

CDS

>AfisC5G02454
ATGAACTCATCTGCAGTGGCTATGTTCTTTTTCCTTGCTAGCATCTTACTTCTCATTACCGTTTTAAGTTTGATTGCTATAATATGGAAATACATCAAACCTGATACCTTAAAGAAGCTACTCACATCCTCTAAGCAACTTCCAGATTACTGCAGCGGTTATCTTCGATGTATCAATTACTTCGACTATCGAACTCTTAAAAGAGCTACAAATAATTTTCATCCCAATAACCAACTTGGTTGTGGAGGTTTTGGGCCAGTTTATCAGGGAACTTTGGATGATGGGACAATGATAGCAGTGAAGCAGTTGTCAGTAGGGAAATCTCAGCAAGGTGAATCAGAATTTCTTACCGAAGTTAGAATGATAACAAGCATTCAGCACAAGAATATGGTTCGGCTTGTTGGTTGTTGTGCTGAAGGAGCACAAAGGCTGCTCGTTTACGAGTACATGAAGAACAAAAGCCTGGACAGTTTACTCTTTGGTAACCATGCAATTTTCTTTAACTGGAAGGTGCGATATCAAATCATTCTTGGCGTAGCACGTGGGCTGCAATATTTACATGAGGACTCGAATTTAAGGATTGTTCATAGAGATATAAAAGCTAGTAATATACTTCTAGATGATAAGTTTCATCCCAAAATAGGTGATTTTGGATTAGCCAAGTTTTTTCCGGAAGATCAAGCATATTTGAGCACTGCTTTTGCTGGAACACTAGGTTATACTGCACCAGAGTACGCAATCAGAGGTGAACTTTCAGAAAAAGCAGACATATACAGTTTTGGAGTTCTTGTGCTGGAGATTATAAGCTCTAGAAAGAACACAGATCTTTCATTGCCAGTTGAAATGCAGTATCTTCCAGAATATGCCTGGAGGCTTTATGAGAAGTCTAACGTGATAGATTTGGTGGATCCAAAACTACAAGAGGACGGCATAACTGAAAGTGAAGTGCTGAACACATGCAAGGTTGCGTTTCTATGTCTACAACCGCTACCAAGATCAAGGCCACCCATGTCTGAAATAGTAGCTATGTTAACTCATAAAGGAAACCAAATGACTTCTCCCATGACACCAACTATTTTGTACAGGAAAAATAGAGAAAACAAAGAAATGTCGTGGGAGAGTGTGACTGAGATGCAGCTTTCGTCAATGGTCACAGATTCGAATGTTTCTCCTTCGACGATTGACGAAAAATATAATGATAATTCACTGGAGGTTCTGCCACCTCTTCTGAGAAAATTTTCAGCCACTTTTAAGTAG

Protein

Gene

>AfisC5G02454
GCATCCTCTTCTATACTGAGTATATATTTGCAAACTAAAAATTGACAATTGTTACTAATGGTAAGCTTAAGGCTTTTTGTGCAGTCAACTCCAAATTATATATGAAGCTATGTATATTTTCATGAAGAGTATGTGATACAGGCATAAACGAATTATAACATAAAGCAATCCAAGAAACTTCACTCTGCATTTTACAATGAACTCATCTGCAGTGGCTATGTTCTTTTTCCTTGCTAGCATCTTACTTCTCATTACCGTTTTAAGTTTGATTGCTATAATATGGAAATACATCAAACCTGATACCTTAAAGAAGCTACTCACATCCTCTAAGCAACTTCCAGGTATCCTTTTCTTCTTCATATTATGGTTTGTAACTTTGTATAAATGGATTTATAACTAGTTCTTTTTATTACCAAGTACAGATTACTGCAGCGGTTATCTTCGATGTATCAATTACTTCGACTATCGAACTCTTAAAAGAGCTACAAATAATTTTCATCCCAATAACCAACTTGGTTGTGGAGGTTTTGGGCCAGTTTATCAGGTAAAGTTACGGGAAATATACTCATGTAGTTTCCTGTATTATTAGAGCATTGATATTGCAGTGCCAATCTGTTTACTGGCAGATACGCACTAAGAACACAATAAATTTATACAAATGATCTGGGTCTAAATTTTATTGTTGTGGCAATGAACTACCATATTGTGACATTTGCTTTTAACCATTCTACTATGTTTCACATCTTTAGAAACCTAATCTTATCAGTTTTCAAAACTCTAATTCCATTCAAACGTTACCATTGTTGATTTAAAGCTCCCCTGTAAAATCTGATCAAGAGATTATAGCATTTCGGTCAGTTGGATTCATTTTCATTCATTATTAGTTTTCAGAATAGAATTTCGAGTAGAATTATAAAAGGAGTGATTACAAGCTTGCTTCATAACATAGATAAAATAATATAGGAAAGAAAAGAAGGAAAATATTGAAACAGTAAATATTTATAGTATGGGCATTAGTAAATATATAAAACTGTTAAATAGAATTTCAATTTTGAGTTTGATTTACAAAATTGTAAGTGTTCATAGGAAAATAGACACTGCGAATAGCAGTATATCCTATTATTATACATGCTCATCATCGCATCTCTAAAATTGGAATTTTCTTGGTCCTTGATGAATATGTACTGTTGGTACAGGGAACTTTGGATGATGGGACAATGATAGCAGTGAAGCAGTTGTCAGTAGGGAAATCTCAGCAAGGTGAATCAGAATTTCTTACCGAAGTTAGAATGATAACAAGCATTCAGCACAAGAATATGGTTCGGCTTGTTGGTTGTTGTGCTGAAGGAGCACAAAGGCTGCTCGTTTACGAGTACATGAAGAACAAAAGCCTGGACAGTTTACTCTTTGGTAACATAAAATTCCCCATTGCATACTATATTATTCGTATGTGCAGTGAATTATAATATATTGTTTGATAAACAGGTAACCATGCAATTTTCTTTAACTGGAAGGTGCGATATCAAATCATTCTTGGCGTAGCACGTGGGCTGCAATATTTACATGAGGACTCGAATTTAAGGATTGTTCATAGAGATATAAAAGCTAGTAATATACTTCTAGATGATAAGTTTCATCCCAAAATAGGTGATTTTGGATTAGCCAAGTTTTTTCCGGAAGATCAAGCATATTTGAGCACTGCTTTTGCTGGAACACTGTAAGTACCCGTTTCACAGCATGACTATAAAAGGGTTAAATTTCACTTGTAATATTGTATCATGATTTAGTGTATGAAATTATATTAGTCTAAGTTTCTTCCACTATATGATTGACAAGAAGTTGAGCATATATACAGTTCATGACAGACAAAACTTTTTCTTTCAGAGGTTATACTGCACCAGAGTACGCAATCAGAGGTGAACTTTCAGAAAAAGCAGACATATACAGTTTTGGAGTTCTTGTGCTGGAGATTATAAGCTCTAGAAAGAACACAGATCTTTCATTGCCAGTTGAAATGCAGTATCTTCCAGAATATGTATGTTTTAACTTACACTTAATAATGAATCTGTTCAGGAGGCCATAGACAATTTAAATATTATCTGATATATGTGATTTGCACAGAAGCCCTTCTGAATTCCTACACTGTTACATTTTTATGATAATATTCCTGAAATAAGAATTTGTCATGCAGGCCTGGAGGCTTTATGAGAAGTCTAACGTGATAGATTTGGTGGATCCAAAACTACAAGAGGACGGCATAACTGAAAGTGAAGTGCTGAACACATGCAAGGTTGCGTTTCTATGTCTACAACCGCTACCAAGATCAAGGCCACCCATGTCTGAAATAGTAGCTATGTTAACTCATAAAGGAAACCAAATGACTTCTCCCATGACACCAACTATTTTGTACAGGAAAAATAGAGAAAACAAAGAAATGTCGTGGGAGAGTGTGACTGAGATGCAGCTTTCGTCAATGGTCACAGATTCGAATGTTTCTCCTTCGACGATTGACGAAAAATATAATGATAATTCACTGGAGGTTCTGCCACCTCTTCTGAGAAAATTTTCAGCCACTTTTAAGTAGAATGATGGATTATGTGTGTGACAGACATACTTATTTTGTTATTGAAATTGTTGGATATAGAAATAATCAAACAGGATTGGTAGTATTTGAATTGATCGTAATGAGCAATATGTGTATATATATGTTATTAAGGAAGTTGGTGCATTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264627.1	4.8e-173	putative receptor-like protein kinase At4g00960 isoform X1
Swissprot	C0LGH3.2	1.9e-86	Probable LRR receptor-like serine/threonine-protein kinase At1g56140
trEMBL	A0A5P1EUA4	3.5e-173	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G56130.1	53.68	1e-89	327		Leucine-rich repeat transmembrane protein kinase

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G02454	AT1G56140.1	285	128	2	61	345	681	962	54.04	7e-90	327
AfisC5G02454	AT1G56130.1	285	129	2	61	345	682	963	53.68	1e-89	327
AfisC5G02454	AT1G56120.1	285	132	2	61	345	698	979	52.63	4e-87	318

Ortholog group

Species	Genes
Allium cepa	g156831.t1
Allium fistulosum	AfisC5G02454
Allium sativum	Asa4G06052.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g56360.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	74	272	156.0	1.1e-45

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005576	C	extracellular region
GO:0004674	F	protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0009506	C	plasmodesma
GO:0009861	P	jasmonic acid and ethylene-dependent systemic resistance
GO:0010193	P	response to ozone
GO:0045088	P	regulation of innate immune response
GO:0046777	P	protein autophosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network