result

Gene information

Detail information of AfisC5G02530

Location

Gene	Chr	Start	End	Strand
AfisC5G02530	chr5	482044424	482046427	+

Sequences

CDS

Protein

Gene

>AfisC5G02530
ATGGGAAGGCTTCCTTGTTGTGACAAGGTTGGAATCCAGAAAGGGCCTTGGACACCCGAAGAAGACATTGTTTTAGTCGCATATATTCAGAAACATGGCCCTCAAAATTGGAGATCAGTGCCAATTCAAACTGGTACAGTCTGCATCTTATCTAAGATTATTACAAAATAACTATTGAATGATTGTAAACTGATGATCACTCCATGCATGCATGAATTGTGTATGTTAGGGCTGATGAGATGCAGCAAGAGTTGCAGACTGCGATGGACGAATTATCTTAGGCCAGGGATCAAGAGAGGAAACTTTACTCTACATGAAGAACAAATGATCATCAATCTCCAATCTTTGCTAGGCAACAAGTAATTTCTTCTTAGTTAATCTTCTTAATTATAGATCAACTAGTATATGTTAGAATATAGAGAAGCATTTTGTAAAGATTGATGTTATAACTTGCTAATTAGTTATTTTTTCATTAATTTTTTATATTTTGTACAACAAGAGCGATACTTAGTTTAAGTAGAACACTCATTATGGTGGACTCGGATGATCGAACCAAAGACTTCTAGAATCACAATCTAGAGATCTTAACATTTAAGCTAGCGGTCTTTTTAACATTTTTTCATAAAGTTGATGATATATTTTTCTACACGAACAATAATTAAAATTTGGTTCAGCCTTTTAAGTTGATGATATATATGTGTGTGTATGTATGTATGTATATATGTGTGTACGCACGCGTGCGTGTATGTATATTAAGGAGCGTTCAATGCACCTCAAACAGTGTAGCATCCCAAATACTTCATGATTTCCATCACAAGTTCGGATTTAAATAATAGTAGTAGTGAAAAGAGAGATAATGAAATATTATTTAAATCAGAATTTGTGGTAAAAATAAAAAGACATTTGAGATGATGTACTGCTTGAGCTGCTATTGAACGCTCATATATATATATGGGTGGGGGCAATAATCAATTGCATCTCGGTTCCTCCTTGATTTCCACCCAACATTCAGAATTAAATAATATAGTTAGTAGAAAAAAAAAGAAAAGGCTGTAGTGTCAAAAATAATTGTGGCAGACAGGAATTGAACACTGGATCCACCAAGAAAATACTAGCAATCTTCTTTTAACCACTACACTAGAGACATCTTCAGTTACATTACTTAACCACTTTATTATTTTAGACTCTTTTATCATTGCTACTTCTTTTTCCCAACTGTTGCCTCTCCATGGGGAGTTGTCCTATTCAAACGTCTAGCTCGTCTACCCCTAAAACCGGACCTGAGTGTGTAATAGGTATACATAAATGGAATAAATCTATTTAAAACTAGAAATAATTATAGAACGTAAAAGTAATATATAGTATATGCAGAAGAAGTTTATAACTGTTTCAAATATATTAATTAGCAGCTCCTTCAACTTCAAATCATGGTTTTGCGTCTAGCTAGCTAAACCAATTAAAAATATTGTGATTACGTCGGTTTTCAAATCTGTGTTTACCTGTATAATTAGGTGGGCGGCCATAGCATCGTACTTTCCACAAAGAACAGACAATGACATAAAAAATTACTGGAATACTCACCTCAAAAAGAAGATCAAGAAGCAACTCATGCTATCTACATCTATGCAAAACTACAGTACTTCATCCAAAATGAATTACCCAAATTTCCCAAGGTTTGCTACTTTTAATTCTGCAAACTATGCATTAAGTACAGAAAACATATCAAGACTTCTAGATGGTTGGATGAAATCCTCTTCTACTACAACCGCTAATCAGGGAAATGCTGATCAAGTCAAGACTAATTACAGCAGTATAAGCAGTAAAAGTAGTGAAAGCAACACTGAACAAGGTAGCAGTGCAGACCTTGAATCTTTACTATCATTTGAGAATCCACATCCGGGAGTAAGAGATGGACAAGTACCCCCTTTATCACCATTTGAAAAATGGCTTGCAACTGAACAATTAGTTGATGGTCTCATGGAAATCTCTGATTCCATCTTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020276150.1	2.1e-70	transcription factor MYB30-like isoform X2
Swissprot	B3VTV7.1	3.5e-67	Myb domain protein 60
trEMBL	A0A5P1EAE3	1.5e-70	Myb-related protein 306-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G08810.1	49.31	2e-68	255	AtMYB60;MYB60	myb domain protein 60

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G02530	AT1G08810.1	290	97	6	1	250	1	280	49.31	2e-68	255
AfisC5G02530	AT3G47600.1	118	20	0	1	118	1	118	83.05	3e-61	231
AfisC5G02530	AT5G62470.2	118	22	0	1	118	1	118	81.36	2e-60	229

Ortholog group

Species	Genes
Allium cepa	g130932.t1
Allium fistulosum	AfisC5G02530
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	53.9	1.3e-14
PF00249.28	Myb_DNA-binding	Domain	67	112	49.4	3.3e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001666	P	response to hypoxia
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009411	P	response to UV
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009626	P	plant-type hypersensitive response
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009809	P	lignin biosynthetic process
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0042761	P	very long-chain fatty acid biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:0080091	P	regulation of raffinose metabolic process
GO:0080167	P	response to karrikin
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network