result

Gene information

Detail information of AfisC5G02562

Location

Gene	Chr	Start	End	Strand
AfisC5G02562	chr5	485797966	485800471	+

Sequences

CDS

Protein

Gene

>AfisC5G02562
AGTTTTTATTATACTAAAACACGCACAATTTAAACTATAATCTTCATAAAATCGGATGTCATCGTATCCGCATCCGTTTTTTGATATCGGATATTTATCCACTTTTCAGGTACGGATACGGACGGATTTCGAATTTTTCGGATATCCATATTCAAACCTAAATTTGAAGACCTGACCACTTTTCTATGCTCCAAAGAATAAAGCTATCTACTTGTTCATTTATTTTGGAGAGTGCTTATTTTATCATGAGGACCGACCGTTGCAGAAATGTTAAAAATTAGCCTAAAAGATAAGTAAGCATTTTTGCCATGACGCTAAAGAATTTGCTTTTTTGTAAAGCAGTATCAGTTGAATACCCATTTTCTCTTCTAAGAAAGAAAAAGTTGCACTGGAAAAGCAGAATATCACAGGAGGTATATTATATATGCTTGTAATAGTCCATAAGCAATCGTCAAAATTTCTCATCATTTATAGTTTTGCATTATCTCGTACAATCTTTATATCATGGTATCTTGAGCAATAATTCTATTTTAATTTCAGGAATTATTGCTTCCTACATTATCATTTATTGCTTTGTCTTGTCATATAGTTATAATATGATCCAGTCCTGTATGAATCTGGTACAGCATAGGAGAGTTTTTGTGTTATTAACACTATTTACTTCAATTATTCGTCTGACCCACAGCTGAAATTTAGAATGTGAGAGTATGTTTTAACGCATGTTCGTTTTTCTATAAATCATCCACATTTAGGATGTAAAACACTTACGATTTCCACTAAGATTGCCAACATGTCAAGGACATTTTTCTTCTTCAATTGTTTGACTCATAGTTACTATAAAGTGGACTTGAGAGTAAAATGGTAAAATTTGTGTTACTAAGTTATGACCTTTATTCTTTTTCTCTATTTTCTCTATGCAAGAATAAGGATACTATGTAAGAGCCATGTGAAAACTGCTGAGATCTCTATTTCTCTCTTCATTGCGGTCAGCTTTACTTCTGATTTTTTTTAAAATGCTATCAGTCCTCATACTCTGCATCAGTATTCTACCTCTGCAAAAGAAGTCAAGAGACAAAAGCATCAAAACTGCACAGTGAAATGCAGAAGCAGTGCTCTCTCACCTGCCTCTCTGTTACTTCTGAATATGCCCATAATGATAAAAGCAGGCATCAACTGCTTCTACTGACAATAACCCACCATTATTTTCATATTTCTACCATTTTAAAATCAACAATGATGTCCTTCACCCAGTCTATATTTGAATGTGTCTACTGATAATTTGACCAAATGTGCAGAATCAGCATCTCTCCTCTGAGAAGAAACAGTGCATCTTTCAGTGTTATTACAGTGCAACTTTCCATTCAATTCACAGAAGATTTCCCACTTCTTTTGACTGACTTGACACTTCCTATGCAGCTTTTATATCTACACAATCGCTTGTAATCTCGCTTGTTTTACTTCTCATTCTTCGTCTTCAATTATGATGACTATGATCAAGGAGATATGGTGTGAATATCCTTTTACCATGCCACAATTGCAGGAGCTGGAGCTCCAAACTCTCATTTTTAACTACATTGTATCTGGTGTTCCCATCCCCTCACATATTATCAACCCTTTTCGAAGAAGTTTTGCCTTGGAATTCTTCTCTTTTCACCCTTCTTGTAAGTCTTTCTTTATCCATTTTCTGTACGGTTTTTGTTTCTGTAGTCTGTAAGCTGGAAAGTACTTTATGGTTCACTTTCAGAAAGTAAATATATGGACATTGTTTTCACTGTAGAAAACTCGTATTTGACTTCAATTTCATTGTAGTGAGCTTTACAAGGAAAGCAGTAGAAGAAGATCCAGAGCCATGGAGATGCAAAAGAACAGATGGAAAGAAATGGAGGTGCTCAAGAGAGGCATATGGAGAATCCAAGTACTGTGAAAGGCATAAACATAGAGGGAAAAGAAGTGTAAACAAGAGTAGCAATATTGCTGCAGAAATGGGTTTAACCTTGTATTCTCACCCTAGTAATGCAAAACAGGCATCATATTTCAGTAATATAGATACTCATCCTTGTCAATTTGAAAGCAGTAGGTGTTTCAATAAACATGAGAATAGGGAAGAAAAAGAGAGTTGGGTAAAGAAGAAGGAGAAGGAAGCGCATTGCTTTGTGTTCGGAGCTGATCTCAGGTCACAGAAGCTTTTGAATGATGTAGTAGAAGATGAGGATAGAGAAGTTCAGTGTCCGAAACTTGGACTTGGTTTGTTTAGTGAATTTCCAAATATTAATAGCAAGTCGTGGATGAATGGGAGCTAGAATACTTGAATCAATGTGTTTTTTTTTTTTCTGTTGGATGATATCGTTGTTTTCTGACCTTCTTTTCCAACTCTTGGCCATGCTTTGTGTTCGTTTAGTTTATGATGCTGAGAATATATTTGTGAACTATTACATCCAGGTCAAGAAATTGTTTCAGTCTTATTATCTTTGCGGTTATATAGGTTGTGGCGGCTTATGACATGAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252247.1	1.5e-32	growth-regulating factor 1-like isoform X2
Swissprot	Q6AWY8.1	2.6e-21	Transcription activator GRF1
trEMBL	A0A5P1FJN5	1.5e-29	Growth-regulating factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13960.1	53.64	2e-24	108	AtGRF5;GRF5	growth-regulating factor 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G02562	AT3G13960.1	110	38	3	13	112	16	122	53.64	2e-24	108
AfisC5G02562	AT4G37740.1	102	42	3	13	106	164	262	48.04	8e-21	97.1
AfisC5G02562	AT2G06200.1	194	110	4	13	185	6	199	32.47	9e-21	97.1

Ortholog group

Species	Genes
Allium cepa	g484464.t1
Allium fistulosum	AfisC5G02562
Allium sativum	Asa4G04610.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	13	45	39.5	3.1e-10
PF08879.7	WRC	Domain	72	112	57.9	5.8e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005618	C	cell wall
GO:0005635	C	nuclear envelope
GO:0005774	C	vacuolar membrane
GO:0005794	C	Golgi apparatus
GO:0008285	P	negative regulation of cell proliferation
GO:0009267	P	cellular response to starvation
GO:0009409	P	response to cold
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0019222	P	regulation of metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048046	C	apoplast
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0061062	P	regulation of nematode larval development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network