result

Gene information

Detail information of AfisC5G02909

Location

Gene	Chr	Start	End	Strand
AfisC5G02909	chr5	546719230	546720642	-

Sequences

CDS

Protein

Gene

>AfisC5G02909
ATGCAGTCTATGCAGCTGCACAATGCCGATAAGGAAAAATTGCTACGAACATCGGCGAAGCATGCAGTAAAGCGAGCTAAGGAATACTACAATGAGAATAAAAAATCATTGCTGCTAACAGCAGGATTATTCATTGCAACCATATTCATTATGAAGGTTTACCTTCAGAAATCAGCAGTTGATGGTAGTTTCAAGCCAACATGGACATCGAAGGCTGCAGAAGAGGCAGAGGAAGTAGCTGCTGTTTACTGTTCAGGGCATGGCAGAGCATATCTCGATGGAAGTAGTTCTGCTGAAGGAGTTCATCAATGTGAATGTAACAATTGCTACACTGGTTCTGATTGCTCTAAGCTAGAGGATGAACTTTGCGTCGTTGACGTAGTAACGTAATATTTTTATACTCTCTCTCTCCATCTATCTCTATTTCTAATAGACATAAATTAAAAACGGGTGTCTGTTTCATCAAACTTGGAATCATGCAGCTTTAAAGTCCGGGAAGATGTAGAATTAAATGTAAGACCCACCTATAGTGTGTGCTTATATGTATTCCAACAGTTCATATTGGTTTGCACCTTTGCGGTTTGAAGGAGCTAAAATGTTTAGAATTTATTCAACATTTCATATAGATGATCTTCTTAACAAATTAAACACATCAACAAAAATGTACTCTGATCCGAAATTTTTTCACCCAAAGAGACGAAGGGAATGGGAGGGAGACATATAAGAGGGGGTGTGTGTGGGGTGGGTGTGTGTGTTTGAGCTATATGCACTTTTAGCATGCCATTGCAATTAAATGACATCTTTCCCTAATTTTGTGCACACTACAGCGGTGACGCTATGTTTCTGGAAAAATACTGGCTGCAGCAAAAATCACTTTCTGCTGTACTAATACCAGGGTGGCACAGAATGAGCTATTATTTTAATCCACATTCTACGAGCGTCGAATCATTTGAGCTTCTGAAACTCATAAAACGTTTACATAAAGTTGTCGGTAATGCAAAAGCTGATGATAAGTACATTGTATTTGGTAATGGAGTAATAACCCAACTTCTCACTGGATTGGTTATCGCACTTTCACAACACAGAGTTTTACTGCCTAATGTGGTGGCGAACGTTGTTGCAGATGTTCCTTACTATCCTGTAAGTTCCTTTACAGACAGCGTTGTATATTTTGTGAAGTGAAACAACTGAACATATGCATTTAATTTTTTAAGTGAAACCATTGAACAATTATGGTTACATATGCAGGTGTTCAGAAAACAGACAGCATTTTTCCGTTATAAAGGGTACCAATGGGCTGGAAATGCTTCAGATTACAGACATACCACATCTCCTGAAAATTTCATAGAACTAGTGACTTCACCTAATAATCCTGATGGCAAATTAAAATTTCCACGAATCAGAGGGCCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	AZG03003.1	9.2e-67	alliinase
Swissprot	P31757.2	1.6e-68	Cysteine sulphoxide lyase
trEMBL	A0A3G8G7W1	6.7e-67	Alliinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	43.46	3e-54	208		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G02909	AT1G34060.1	260	131	8	34	287	3	252	43.46	3e-54	208
AfisC5G02909	AT1G34040.1	254	131	6	37	287	6	250	43.70	3e-52	202
AfisC5G02909	AT4G24670.2	164	90	5	119	280	73	228	39.02	1e-23	107

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC5G02909
Allium sativum	Asa4G00086.1; Asa4G06362.1; Asa5G04356.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	67	119	80.7	6.6e-23
PF04864.10	Alliinase_C	Domain	125	282	203.0	5.4e-60

Gene Ontology

Accession	Ontology	Name
GO:0042742	P	defense response to bacterium
GO:0005789	C	endoplasmic reticulum membrane
GO:0009684	P	indoleacetic acid biosynthetic process
GO:0009723	P	response to ethylene
GO:0009958	P	positive gravitropism
GO:0010078	P	maintenance of root meristem identity
GO:0010087	P	phloem or xylem histogenesis
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0016846	F	carbon-sulfur lyase activity
GO:0043562	P	cellular response to nitrogen levels
GO:0048467	P	gynoecium development
GO:0048527	P	lateral root development
GO:0070529	F	L-tryptophan aminotransferase activity
GO:0070546	F	L-phenylalanine aminotransferase activity
GO:0070547	F	L-tyrosine aminotransferase activity
GO:0080022	P	primary root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network