result

Gene information

Detail information of AfisC5G03416

Location

Gene	Chr	Start	End	Strand
AfisC5G03416	chr5	621936233	621938709	-

Sequences

CDS

Protein

Gene

>AfisC5G03416
CTTTATAATAGTAAGCAAGTTGTGGTCTCTTTCTCACTTCACATGAGCATTTAGAGTTTTTCCCCTCTTCTCCTTCTCCTCTTTCCAGAACCCTTTTTTCCACTATTATTCTTTTCTTCATTTCTCAATTTATTATTCTCACTCACTCTCTCACTCACTCGCATTATATAATTTATATATACAACAACAGATCCGAGGTTCACTTTGATTGATTTATACACATCAAATCAAAGTGGTCTCTCTATATATCCATCTATCCATCAAATCATGTCTGATTTGAAACTTTCTTAAACATATCAAACTTAAATATTCATAGGACCATCCATCAAATCACTTTCAAAATTTTTATATTTCTTTCAAAAGTTTTAAACCTAAATTTAGATTATGTCTTCCTCCTCAACCACCTTTTCTTTGGAGCACTTCTCTCCTCCTCCTTCTGAGCAACTCTGCTATGTCCACTGCAACTTCTGCGACACCGTTTTAGCCGTAACTATTTTATTTTGTTTTTCTTTATAAAATATTAGCAGCAGTAATGGTTAATTATGAGTTATATTATGCAGGTGAGTGTTCCATGTAGCAGTTTGTTCAAGACAGTGACAGTGAGATGTGGTCACTGCACAAATCTTCTGGCTGTTAACATGAGAAGTTTGTTGCTTCCTGCAACAAATCAGCTTCCATTTCCCCACTCTTTTTTGGCTCCTCATCATAATCTCTTGGTATTCTTTCTTCAGTTCAATTGATTTTTGTTTATGGTTTTTTGTTTTTTGTTTTTTAGTTTTAGTTTTTTTTTATATATTTTAATTTCTTGTTTGAAATATGTTTGGTGCAGGATGAACTTGCATGCCAGGCACCACCAAGTTTGCTACTGGATGCACCGAACTTGCACCACAATAATTTTATGCCGCCTTTACCTAAAGGAATTGAAGAAGAAAGAGCGCCGCAGATTAACACAGTTAATGTTAATAGACGTAGGTTTTCTTCTCTTTTTTTTTCAAAAAATGATTAACTGAAAAGAGTAGTAGAAATTCATAATTTAAGAAGGATTTTTCTGGGTTTATGTTAGAGAATTGATTTTGAGATAAAGAAACGAAAAAGAAAATAATAATAACAATTTTAGTAGGTATTTAAGTTTCTGATTTTGTGCTGTTGTGAAACAGTACTTGATCTTACTCTTCTTTCTAGATGCCTGCAACTTGTCCAAGATCCGCCATACATTGACTAATCTTAGTCTATGGTTTTATAAGTGATTAAACACTTCTAACAGTTTATGTGTTTATTTTCTTTTTGTTTTACTTTGTTGAAGTTTTTACTGATATTTAAATTGATGAGCAGCTCCAGAGAAAAGGCAAAGAGTTCCTTCAGCTTACAATCGTTTCATCAAGTATGAAAAATTCATGCCAACTGAAAATTAAATAGTTAGAATTTAAATTTTAAAAATATTTTTGTGATTTATTGCAATTTTAAATGAATCCAGGGATGAAATCCAGCGCATCAAGGCTGGGAATCCAGACATTACACACAGAGAGGCTTTCAGTGCAGCAGCAAAGAATGTAAAATTCTTCAAAAGTTTTAAATTTTTAGATCTTTCAATTTTGAATTTTGATACTTAATTTTTGAATTTTTTTTACAGTGGGCACACTTTCCTCACATCCAATTTGGCATGATGCATGATCAGAGTATGAAGAAGAACAACATTCGCCAGCAGGTTAATTGATCAGTTAATTAATTGCATAATAGTTAATTTAATTACGGGTTCTTATTTGTAAAAAACAAAAAGAAAAATAAGCTGCAAAAAATGAAGTGAGATGCAATATAATTAGCACTCTTTGGAATCCAAAACCCTAGTTTGATTAAAGCTGCAAGCTGCAGCCACCTCTATATGCAGATTTTAGGCTTCAGCTTTTTAGTAATTTCAGCCTACACATTCATTCATATGAATTACTCTTTTTGGCTATTCAATTTATAAATTTAAATTTTGGCAGGAAGGCGATGATGTTATTATGAAGGATGGGTTTTATGCAGCTGCAGCAGCAAATTTGGGGGTCACTCCATTCTAATTAGTCAAAAAATAAACTACCACCTAAATTAAAACTAAATAACTAGTACTTATTGTTAAAATAAATTTGAGTTTCTAGGGTTTGTAGCTAAGATCTCTACTGTTAATTTCTAGGGTTTAATATTATGTTTCTCTTGATGTTGGAGGATGATCAGACTGTTGGCAGTGTATGTTTCATTTAATATTTTCTAGGGTTTTGAAATGCTTTTAATTCCATCTTTTTTTTTCCTTTTCTTTTCCTTTTTATGTTGTGTTGGATAAAGAGAGGCCATGGCTTCAAATGAACATATCATGCTTTTGCTTCAAAATGTGATGTTTTTTAGTTGTAACTACTGACTATATTGCTGGTACTTGTTAGAACTTGATCTTGCTACTGTTGTATTAATTATAAGTTTCAACCAAATCTGATTTCAATTTTTCA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008787013.1	3.5e-90	protein YABBY 4-like
Swissprot	A2X7Q3.1	2.4e-67	OsYAB7
trEMBL	A0A8B7BWW4	2.5e-90	protein YABBY 4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G45190.1	61.54	6e-66	246	AFO;FIL;YAB1	Plant-specific transcription factor YABBY family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G03416	AT2G45190.1	221	73	8	9	223	15	229	61.54	6e-66	246
AfisC5G03416	AT4G00180.1	228	75	9	11	221	17	238	57.02	4e-56	214
AfisC5G03416	AT4G00180.2	211	75	8	28	221	1	207	54.50	8e-47	183

Ortholog group

Species	Genes
Allium cepa	g218439.t1
Allium fistulosum	AfisC5G03416
Allium sativum	Asa0G05548.1; Asa3G02304.1; Asa6G04305.1
Arabidopsis thaliana	AT2G45190.1
Oryza sativa	LOC_Os02g42950.1; LOC_Os02g42950.2; LOC_Os04g45330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04690.10	YABBY	Family	17	185	232.5	3.2e-69

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009909	P	regulation of flower development
GO:0009933	P	meristem structural organization
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0010022	P	meristem determinacy
GO:0010093	P	specification of floral organ identity
GO:0010154	P	fruit development
GO:0010158	P	abaxial cell fate specification
GO:0010450	P	inflorescence meristem growth
GO:0048440	P	carpel development
GO:0048833	P	specification of floral organ number
GO:1902183	P	regulation of shoot apical meristem development
GO:2000024	P	regulation of leaf development
GO:0090706

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network