result

Gene information

Detail information of AfisC5G03745

Location

Gene	Chr	Start	End	Strand
AfisC5G03745	chr5	683407836	683409882	+

Sequences

CDS

>AfisC5G03745
ATGCCATCAGTTAACTCCAAAGTCTATTATTTCCCACAAGGCCACGCCGAGCATTCTCAATCTCATATCGATTTTGATATCAACGAGGAAGAACAAGGAGTAAGCAATGCAGCATCTGAACTGCATGAAAAGCCCTCTTCATTTGCTAAGACTTTAACTCAGTCCGATGCTAACAATGGTGGTGGATTCTCAGTCCCTCGTTACTGTGCTGAGACCATATTTCCTAAACTGGACTATACAACAGATCCTCCAGTTCAGACCATTCTTGCTAAAGATGTGCATGGAGAGGTTTGGAAATTTAGGCATATTTATAGGGGTACTCCTAGAAGGCACTTGTTGACTACTGGATGGAGCACTTTTTTGAATCAAAAGAAGCTGGTGGCAGGAGATTCGATTGTGTTCTTAAGAGCAGATGATGGTGATTTATGTGTTGGGATTAGAAGGGCAAAGAAGGGTATTGGTTGTGGGCCTGAGCAACCTACTGGATGGAACCCACCACTAGCTTATGGTGGTGGGGTGTCCATGTATTCAAGAGAGGAAGAGAATAATAATAGTATGAGAATGATGAGGAACAATGGTAGTTTGAAAACAAAGAGTCGAGTAATGAGTGAGTCGGTTATCGAGGCAGCTAGGCTTGCAGCAAACGATCAGCCATTTGAGATAGTGTACTATCCTAGGGCAAGTACCCCTGAATTTTGTGTTAAGGTGGGAGCAGTTAGAGCTGCAATGCGAGTTCAATGGTGTCCGGGGATGAGATTTAAGATGGCTTTTGAAATGGAAGATTCTTCTAGAATTAGTTGGTTTATGGGTACTATTTCTTCTGTTCATGCAGCAGATCCGATCCATTGGCCGAATTCGCCTTGGAGACTTCTTCAGGTGCTGTATGATGATACCGGGGTTACTACAAGCTGGAAGGAAGGAAAAATTATTTTGCTGCATTCATTCTCTTTCAAATTGGTCATGCTTGGATTAACGTATTTTGTATTGACGTTCATATATCTTTGCTTTTAG

Protein

Gene

>AfisC5G03745
ATGCCATCAGTTAACTCCAAAGTCTATTATTTCCCACAAGGCCACGCCGAGCATTCTCAATCTCATATCGATTTTGGTAATTCTTCGAAGATTCCACCCTTTGTACTTTCCCGAGTTGCTTCGGTCAAATTCTTAGCAGATCCAGAAACAGATGAAGTGTTTGCGTAGATCCTCCTTGTACCGATCCAACATCATGATCTAGATATCAACGAGGAAGAACAAGGAGTAAGCAATGCAGCATCTGAACTGCATGAAAAGCCCTCTTCATTTGCTAAGACTTTAACTCAGTCCGATGCTAACAATGGTGGTGGATTCTCAGTCCCTCGTTACTGTGCTGAGACCATATTTCCTAAACTGGACTATACAACAGATCCTCCAGTTCAGACCATTCTTGCTAAAGATGTGCATGGAGAGGTTTGGAAATTTAGGCATATTTATAGGGGTACTCCTAGAAGGCACTTGTTGACTACTGGATGGAGCACTTTTTTGAATCAAAAGAAGCTGGTGGCAGGAGATTCGATTGTGTTCTTAAGAGCAGATGATGGTGATTTATGTGTTGGGATTAGAAGGGCAAAGAAGGGTATTGGTTGTGGGCCTGAGCAACCTACTGGATGGAACCCACCACTAGCTTATGGTGGTGGGGTGTCCATGTATTCAAGAGAGGAAGAGAATAATAATAGTATGAGAATGATGAGGAACAATGGTAGTTTGAAAACAAAGAGTCGAGTAATGAGTGAGTCGGTTATCGAGGCAGCTAGGCTTGCAGCAAACGATCAGCCATTTGAGATAGTGTACTATCCTAGGGCAAGTACCCCTGAATTTTGTGTTAAGGTGGGAGCAGTTAGAGCTGCAATGCGAGTTCAATGGTGTCCGGGGATGAGATTTAAGATGGCTTTTGAAATGGAAGATTCTTCTAGAATTAGTTGGTTTATGGGTACTATTTCTTCTGTTCATGCAGCAGATCCGATCCATTGGCCGAATTCGCCTTGGAGACTTCTTCAGGTTTGCCTCAAATTGTTCGAATCAAGTAAATATTATATATTGCATAACCAAAACTTAAAAGTGTTGGATAAGCTAAGTTGAAATTTTAATTGTGTAAATAGAGCCCATTTGGATAAAAGAGTTGAATAGTAACTATTGCACAGTCTTAAGTGAACAACAAAATATAAAAGTGTTTGGATAAACAAGTTGGAATTGTACTTAAACTTAGTAGTGGGACTATGGAAGTTGAAATAAGTCATAAGACAGTATATGTTGTCGACTTTTAAGCAACTTGTTTCATCTCAGGAAAAGTAAAAAATAACAGTTATTATATAAATTTCTTATCTTCATATTATATTTCTTTTATAATTGATTTCATCTTTAACATTTGTTGGCTGCATCCATTATTGTTCTATTTTCTTCAAAAATTTCTGAGTTGCATGCCCAAATATATGACCATACTCACATTTTAGTTGTTTATATTTTATAATCATAAAAAACAGATGTACACCTAAAAAGTTTCACCTGTCCTCGTACAAAGATATGAAAAGTGTGCATGGTAATGTTGTTTTTGTTTCACCTGAAATTGTACAAAAATTTGTGTCCTGTCCTTGTTTGCTGTTTCACCTGAGAGGAAGTGGGTGATTGGGTTTTGCTGTTTAAATCATATTTATAACTGAAAATGCAGTTTTTGTTCTTCTGCATTGTATATTGCCTGGTAATAATCCGCTTCTTGTTGCTGTATTTTCTAAATCACACGTTATTTTTGTTTTATTTCATGTCAATGTCTGTTTAGTTAAACTGATGTACTGGCAGTCTATTTAGTTAAAATGATGTACTAACAGTCTTTATCTTTTTTGTTATGAAAAATTATATAACTTGCGGATGATGTTTGGATTTGAAAAATAACTTATGTGCTTCGTTTTGACAGGTGCTGTATGATGATACCGGGGTTACTACAAGCTGGAAGGAAGGAAAAATTATTTTGCTGCATTCATTCTCTTTCAAATTGGTCATGCTTGGATTAACGTATTTTGTATTGACGTTCATATATCTTTGCTTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259738.1	1.6e-123	auxin response factor 18-like isoform X2
Swissprot	Q93YR9.1	6.7e-106	Auxin response factor 16
trEMBL	A0A5P1EYY5	1.2e-123	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	59.89	3e-112	401	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G03745	AT4G30080.1	349	92	6	1	305	31	375	59.89	3e-112	401
AfisC5G03745	AT2G28350.1	350	95	7	1	297	22	365	56.00	1e-100	363
AfisC5G03745	AT1G77850.1	339	154	6	1	297	31	361	39.82	2e-64	242

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	48	149	75.2	2.8e-21
PF06507.10	Auxin_resp	Family	209	292	114.7	1.5e-33

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0009555	P	pollen development
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009743	P	response to carbohydrate
GO:0010154	P	fruit development
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0035198	F	miRNA binding
GO:0045229	P	external encapsulating structure organization
GO:0048366	P	leaf development
GO:0048441	P	petal development
GO:0048442	P	sepal development
GO:0048589	P	developmental growth
GO:0048829	P	root cap development
GO:0051301	P	cell division

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network