result

Gene information

Detail information of AfisC5G03945

Location

Gene	Chr	Start	End	Strand
AfisC5G03945	chr5	733923745	733927262	-

Sequences

CDS

Protein

Gene

>AfisC5G03945
ATGCCAAAATGTATAATGTATCAGGTCATCAAACATATTGCTGCCATGGGGAGAGGAAAGATTGAAATTAACAGGATTGAAAACACAACAAATCGCCAAGTTACTTTCTGCAAAAGGAGGAATGGATTGATGAAAAAAGCTTATGAACTTTCTGTGCTTTGTGATGCCGAAATTGCCTTAATTGTTTTTTCGAGTCGAGGCCGCCTCTATGAATACTCAAATTTGAACAGGTCAGTTTCTTAGATATTCTTGATTTAGCTTAAGTTCTTCAACTTGTCTTATATATCTTTGATCTTTCATTACATCTCCTAGATCCAGCTTGTTGTATTCTACAACTCCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTGAGTTTAGTTAAAGACTAACAAGATCAAGGTCGACAATTGCTATATTTTATGTTTAATTTCTGTGTATTTCCAGTAGTCTATATGTATATTGTTTGAAACCAAATAACTAAAAGAACAAAAAGTTACGTGCAGATCATGTTTGTTTCTTTTTATAAGATAGAAAAGTTTTTTTTTTCCTCTTCATATTTTAGCTATCTTTGTTTTTCAGTCTTAGACTTATGACAAGCTTCTTTTAGTATATATTTTTCTTTTTAAATAAGACTGATCGGTTCCATTTTCTTTGTTTCTTAAATTAACTGTTTTACTTGATCCCAAATTCTTTGTTTATTTATTAATTTTGAAATTTATGCATGAAATTATTATACGCCAATTTTGGTTGAACTGTTTACAGTTTTAATTAAACATAGAAATGTAGGGTTTTGTAGCAAACTTAAATTATCTCTCTACTTATCAATATTTTGTAGCAAACTATTTAATACTAGACCATGAGTACTGTGTACATTTAAGGTTTAAACAAAGTGTTAGCTTTTAAAAGATTTTATTAGAATAATATATGATGAGTAGTCTAGAAATATATATGCACTTAAAATTTCATGACTTTTCTTTTCGTTTATGAATTTTGCTGAAACATACATTTTATTTCCATTTTTCTAGATGGTAGGAAATAGAATATTTACAATAACATAATTAATTCACTAGCTATATGTACGAATTAAGAAATATATATTAAAGAATAATCTGACTACAAATTTTGGGTGATGTTGCACTGTGTGCTGTCAAGGCTTCAAACCTGTGAAAGCTAACTCAAAGATTTGTCTAAATCTATATAAGATTTGTTTTGATTTTTTGAAAGTTAAATGAATGAAAACAGTCCATCTCTTTTTGCAGACTATAATGATCTTTCCCAACATATATCTAGCTAGCATATACATGGAAACTGTCTCTTTTTACTAAGTTCATTTTTAAGTTTCTATTCTAGTGCAACTCTCTCTCCCTTTCTTTTACTAGTTATAATTTCCCATTCAAAGATTGATTATACATTGATTTTAATAAAAATTTCAAGTTCCTATGTTGTTGTGTGTACAGTACTCCATGTTGTTTTCATGACATTTAAATTACAAAACCTGTCAACAAAACTTGAAAAGAAGATTGTATAAAACAAATTGGATTCAATGTTATCAATTAATTGATTTTGCAAGAAAACATGTTAAGTTGTGGATGCTTTGTCAGGACAATTCATTTCCAAATTCATTATAATTCTCGTAATAAATGCTTATGTTAGTCTCTTGTTCCATGACCACATAAATGATTTGGATCTTGCTTGGTTTTTTGTTTGTACATAGACAACATTTTAAATAGTTGTTTGATAACAAATTATAACCACATCTAATTTAGTTACTTGATACCAGAACATAATTAAAGATCAAAATATTTTAAGATATCACGTGTTGTAGATGGATGGACTCTATTATATCTGAAGTTCCAAATTTTATATTTTGATTTTTTGTGTCATGGTTTTTGTATTATTATTTTTTGATTAAATATTTGATTCAGCATAAAATCAACTATTGAGAGATATAAGAAGGCTTGCTCAAACAATTCAGTCTCCAATGCAGTCGTCGAGGTCAATTCTCAGGTAATTTATTAGTTAAATATTAATTATACTAGCTTGTGAGATGTGTATTTTCTGATAATAAAAAGGTAAATTAAGTAATCAACAATGTATCAGATCCTTACAAGTATATGATTAAAATTATATTAAGTGTAATATGCATGAAATTGTTGCTACAGCAGTACTATGAGCAAGAAGCTGCAAAATTACGCCATCAGATTCAAATTTTAACTAACGCTAACAAGTAAGCTTAATTATGGCTAGTGTTGAAAGCATTTCATCTCAGCAAATATTTGTATTTACATACTATTTATTATATTCAAAATATAGACACTTAATGGGTGACTCACTGAGTGCTTTAAGTCTCAAAGAACTCAAACAACTCGAGAACCGACTTGAAAGGGGCATTACTAGGATACGCTCGAAGAAGGTTAGCTACAATTTTGTTAATTTTTTTTTCCATTTAAATATTTAATCAAAGTTTAACTTATCAATATTACATCATTTTGGTGTCATTCTAAATTATAAATTTTCCTATCAGCATGAGCAATTGTTAATGGAGATCGAATACATGCAGAAAAGGGTAACGGCGTGCTCAGTATGTTTTATTTATAAATAACTTACCCTGACTTCCTGTTAACGAGATGAATTTCCATTGTGCAGGAGGCAGAACTGGAAAGTCTCAATTCTTTTTACAGAGCTAAGGTATGATGGGGGAAAAAAAAATTGTATGTATTTGCATGTCCTTTTTGGTTACTTGGCAACTTCATGCAAATATTAATTGAATAATATAATTCCTTTTTTTTTCGACTAAAATAATATAATTATATTGGCATGCATTGGTCACAATTGGGGACATAAAATCTTCCAAGGGCTAATGTTCTATAAATGTTGCAATGTAGTTTATTTGATCATTGTGCAAGAACAAATAACATGTCTTGCATATCAGCACTAGGACAATATTGTGGGAGATAACTTAAATACCTGTTTCATTGAGTATATCTTTATATGCATTTTTAAACATAACCTATATATCAAATAATGTACACGACATTAGTGTCTCGAAACATATACTCATTTTCATTCTAATGCTGCTTTGTATACTGAATGTATTTTTAACGGGTTACTCAGATTGCGGAGAATGAAAGAGCGTACCAAATGAATGAAGCTCAAACAAGCACAGAACTCAGTGCACTTCCACCATTTGATACCAGAAACTATTACCATATGAACCTGCTGGAAGCTGCATTTCCTCATCATCATGATCAAACTGCTCTTCATCTAGGATATGAAACAAAAGCTGATCCTGAAGAAGGTGCTAATTAATGGTTATATTTCCAATCTATCAAACTTCTAAGTATTAAGTAGTTGCATTAATGAATCATCAGTATTTTGCTTTTGTGTGTATGTGTATGCTTATCTTGCTCAAAACTTCAACCTTTTGCATGCTTTGTTTGATGTTAGTCCATTTTCCAAACTGAAGTCATTGCTGGTTATTATGAAATAAGTAATACATTTCTTGGTGC

Functional annotation

Database	accession number	e-value	annotation
nr	BAD83772.1	2.1e-91	MADS-box transcription factor
Swissprot	F6I457.1	1.6e-72	VviAG3
trEMBL	Q5KT55	1.5e-91	MADS-box transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G09960.1	61.21	1e-74	276	AGL11;STK	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G03945	AT4G09960.1	232	79	4	16	238	1	230	61.21	1e-74	276
AfisC5G03945	AT4G09960.3	242	87	4	6	238	17	256	59.50	1e-74	276
AfisC5G03945	AT4G18960.1	235	76	4	17	237	18	251	61.28	7e-74	273

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	25	72	92.2	8.8e-27
PF01486.14	K-box	Family	102	187	79.1	1.9e-22

Gene Ontology

Accession	Ontology	Name
GO:0000165	P	MAPK cascade
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0046983	F	protein dimerization activity
GO:0010214	P	seed coat development
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048283	P	indeterminate inflorescence morphogenesis
GO:0048481	P	plant ovule development
GO:0080155	P	regulation of double fertilization forming a zygote and endosperm
GO:1903338	P	regulation of cell wall organization or biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network