result

Gene information

Detail information of AfisC5G03991

Location

Gene	Chr	Start	End	Strand
AfisC5G03991	chr5	744533206	744534888	-

Sequences

CDS

Protein

Gene

>AfisC5G03991
CCACAATACAAGCACCTAACCTTCTCTTGTATAAAGTTTTAACAATGGGAGATCGCAATCCAAATGATATACCCCCAGGTTTCCGATTTTACCCCTCTGACGAAGATCTTGTGGTTCACTTTCTTGCTCGAAAAGCCTCACACCTTCCTTGTCAACCCAACATCATTCCTACTCTTGATCTCCATAATTTTGATCCATGGAGTCTTTATGGTATTTCATCAGTATATGTATATTTCATAGCTAAATATATACTATAGTTCATTCAATTATACCGTTATGTGTGTGTATATATAGGTAATGCTCTTCAAGGAGGCAACCAAGTGCATTACTTCTTCGCTCGCAACACCCAACATAGAGCTACACCAAGCGGGTACTGGAGCCCCATCACCGTTGATGAATCCATAACGAACAGTGATCAAGTTATCGTGGGCTTTAAAAGAACTCTTATGTTCTATTTCGGCGATATGAAGACTAATTGGGTAATGCATGAATACCATTTATCAGATGCTATTGTTAACAACACTAGAAGATCTTCCAAGAAGAGGGGAACTCCAAGAATTGTAAGTTCTCTTGCATTATATACAATTACTTAATATCATAAAAGTGTTAGTGGGTGATTTTCTCAATTTCTTTTAAAGCTCTGCCCACTGTAACATTTCCCCTATTCAGATACTTATTATTATTAGCAACTTTTGTATAACACAATCTTTATATTTCGAATACACGGCTGCCCCTCCTAAAACAAGTTTTAAAAGACACCACCGTTTTTAGTTTCAATCAAACTACAAATATTTCCAGTTTTAAATTAAAACCGCAAATATTCGTACTTTTTCAACAAAAAATTCAAAAAAAATAAGTTTGTTCGTAGAAACATGGGATTAAATTCAAATTTAATTTTTGAAAAAATGGAAAAAATAATTTTAAATATGTAATTTAAAACATGTTTTTTTTAACTGTTTTTCGTGTATCAAAACTGAAAATAAGGACAGATCCAAATTCCACTTATTATTATCAAAAGCCTTCTTGGCAACATTATTCTCTAATCAATATGTATTCATAGTCATATATAACTAATTGTTGGATATTAACTATAGGAAACCAACAAATGGGTGATTTGTGGAGTATATGAATCATCATGTAATTCACATTCGAACCATAACGATGGAGGACGAGAGCTTTCGTGCTTGGACGAAGTGTTCTTATCATTTGACGATCTCGATGAAGTGAGCTTACCAAATTAGAACATGGAAGAAGTGTTAATAAAAGAACTAGTTGGCCAAAGCAAGCTAACCATGTAATGTAACCACTAATTGTTCACTTGAGGCTTGTTTTTGTCCATAGTTTTATCTGAATATAGCTGATGTTATCTCCTAAATGCTAAAAAAGATAACAACGGTTATATTCATTCCACAATCAAACTGCCTCAAACACTCTGTATTTCAATGTACTTTTTTTGCTTAAATAACAGTTTAAGAGTTGAATGTGTATCAGTTTAGTGTGTAACTGTGCATTATGTACACTTTTGAATTCAGTTAGATTAATCATTAGCTGTTGTGATTGCGTCTTAGGAAAGCAAATTAAGGAGGCATGTCTCCACTTTTTTGGTTGAAAATGTAAATTACTGGGATGATGTTTGTGTGTGTGTGTTTTTTTTTATTGATTATATAAGATGGATTGGAATGT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246446.1	6.4e-80	NAC domain-containing protein 104
Swissprot	Q8GWK6.1	1.5e-49	Protein XYLEM NAC DOMAIN 1
trEMBL	A0A8K0HZM8	3.9e-63	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G64530.1	53.44	1e-49	192	ANAC104;XND1	xylem NAC domain 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G03991	AT5G64530.1	189	80	4	8	191	2	187	53.44	1e-49	192
AfisC5G03991	AT1G69490.1	184	97	6	9	181	9	181	35.33	5e-27	117
AfisC5G03991	AT1G61110.1	165	93	3	9	160	16	180	35.76	6e-27	117

Ortholog group

Species	Genes
Allium cepa	g60765.t1
Allium fistulosum	AfisC5G03991
Allium sativum	Asa3G02195.1
Arabidopsis thaliana	AT5G64530.1
Oryza sativa	LOC_Os02g34970.1; LOC_Os04g35660.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	10	124	79.7	2e-22

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009644	P	response to high light intensity
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009753	P	response to jasmonic acid
GO:0009825	P	multidimensional cell growth
GO:0009835	P	fruit ripening
GO:0009962	P	regulation of flavonoid biosynthetic process
GO:0010029	P	regulation of seed germination
GO:0010089	P	xylem development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045995	P	regulation of embryonic development
GO:0046982	F	protein heterodimerization activity
GO:0048317	P	seed morphogenesis
GO:0048527	P	lateral root development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0080060	P	integument development
GO:0090400	P	stress-induced premature senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network