Detail information of AfisC5G04013


Location
GeneChrStartEndStrand
AfisC5G04013chr5747428172747434400-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAFX61409.13.1e-101PISTILLATA-like MADS box protein
SwissprotQ0HA25.21.4e-69VvMADS9
trEMBLK7WHJ82.3e-101PISTILLATA-like MADS box protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G20240.152.452e-59 224PIK-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105773.75.2e-21
PF01486.14K-boxFamily8216262.92.1e-17

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity
GO:0008360Pregulation of cell shape
GO:0010093Pspecification of floral organ identity
GO:0019252Pstarch biosynthetic process
GO:0043068Ppositive regulation of programmed cell death
GO:0048316Pseed development
GO:0048481Pplant ovule development
GO:0080155Pregulation of double fertilization forming a zygote and endosperm
GO:2000029Pregulation of proanthocyanidin biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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