Detail information of AfisC5G04015


Location
GeneChrStartEndStrand
AfisC5G04015chr5747684539747701581-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020245771.19.2e-225histone-lysine N-methyltransferase ASHH2 isoform X3
SwissprotQ2LAE1.12.3e-151Protein SET DOMAIN GROUP 8
trEMBLA0A5P1E8049.0e-222Histone-lysine N-methyltransferase ASHH2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G77300.143.920.0 667ASHH2;CCR1;EFS;LAZ2;SDG8histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific)

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag497957.t1
Allium fistulosumAfisC5G04015
Allium sativumAsa4G03466.1
Arabidopsis thalianaAT1G77300.1; AT1G77300.2
Oryza sativaLOC_Os02g34850.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF07496.12zf-CWDomain64769244.88.5e-12
PF00856.25SETFamily81892459.64.3e-16

Gene Ontology
AccessionOntologyName
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0000414Pregulation of histone H3-K36 methylation
GO:0000979FRNA polymerase II core promoter sequence-specific DNA binding
GO:0001525Pangiogenesis
GO:0001702Pgastrulation with mouth forming second
GO:0001763Pmorphogenesis of a branching structure
GO:0001843Pneural tube closure
GO:0003682Fchromatin binding
GO:0003714Ftranscription corepressor activity
GO:0034728Pnucleosome organization
GO:0006298Pmismatch repair
GO:0006303Pdouble-strand break repair via nonhomologous end joining
GO:0006368Ptranscription elongation from RNA polymerase II promoter
GO:0008270Fzinc ion binding
GO:0010793Pregulation of mRNA export from nucleus
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0046966Fthyroid hormone receptor binding
GO:0030331Festrogen receptor binding
GO:0030900Pforebrain development
GO:0033135Pregulation of peptidyl-serine phosphorylation
GO:0035441Pcell migration involved in vasculogenesis
GO:0042799Fhistone methyltransferase activity (H4-K20 specific)
GO:0044451Cnucleoplasm part
GO:0046965Fretinoid X receptor binding
GO:0046975Fhistone methyltransferase activity (H3-K36 specific)
GO:0048332Pmesoderm morphogenesis
GO:0048701Pembryonic cranial skeleton morphogenesis
GO:0048864Pstem cell development
GO:0050681Fandrogen receptor binding
GO:0060039Ppericardium development
GO:0060669Pembryonic placenta morphogenesis
GO:0060977Pcoronary vasculature morphogenesis
GO:0097198Phistone H3-K36 trimethylation
GO:0097676Phistone H3-K36 dimethylation
GO:1903025Pregulation of RNA polymerase II regulatory region sequence-specific DNA binding
GO:1990234Ctransferase complex

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.