result

Gene information

Detail information of AfisC5G04109

Location

Gene	Chr	Start	End	Strand
AfisC5G04109	chr5	761645137	761646666	-

Sequences

CDS

Protein

Gene

>AfisC5G04109
GCTACACTATCCTACATGCTTCTCAAAACAAACATCACTACCCCAACTCCACATACCTCCATTAAAACCAATCATCTTCTACTTTCAACACACCTATATATCATCATACACACATCTTTAAACGCATATAATCAAGCATGTCTCTCAATCAAGTAGCCCAAATCAGCCCTTCACAATCCTGGATTTTGCAACAAAACCAACCTCATTTCTTCCAGATAGACAACTACAACCACCACTACAACCATGAAGTCATCAACTACAGAAAAGAGTACATGTTTGAGAAGTCTCTTACTCCTAGCGACGTGGGCAAGTTAAACAGACTAGTCATACCAAAACAGCACGCTGAAAAGTACTTCCCTTTGGACAGTGAAGCTGGAGAAACTGCAATTTTACTAAGTTTTGAGGATGAATCTGGGAAACTGTGGAAGTTTAGGTACTCTTATTGGACTAGTAGTCAGAGTTATGTGCTCACTAAAGGTTGGAGTAGGTTTGTTAAAGAGAAAAGTCTCGATGCTGCTGATACTGTTGTGTTTGAAAGAGTAAGAGTTCGTGGTGCTAATAACGTCGATGAGCATTTTTACATCAGCTGTAGGAGAAAGGGATTGAATGAGACTAGCCATAATGCTGCCTCTAGCAATTTTCCTACCTACTACATGAATTCAGTTCATCATTCAGGTATTGTTCTCAACTGTTTGTCTTTCTTTTTTTTCTGAAGTTTGATGAAAATAATAATCCCACATAGAGAAATATATAAATAAGATCCAGCATATATACTAAAAAAGACTATTATTCATGTTGATTGGTTGCTTTATGAATAACTACTGAACTGAAAAAAAAAAGCTAACTATCTTTTTGCCTGAATTGCAAATTAACCTTTTTTGAAAAATGCAGTGCATGGTAATGGTATGGAGAGGACAACTGCAACATCAGCAACTAGAAAACTCAGGCTCTTTGGTGTGAATTTTGAGTGTCCTGAGCCTGATCATCTTGTTTAGAATTAAGAATGTAAGTATGTTCTTTCTATGCAAAACTCTTTGTATGTTAACTTGCACTGAAACAGCTTCACAATTTCTGCACGCATGACATGACATAAGTGAGAAATATGTACGGTACTATGTTCACCTATGGATGATGTATAAATTTTGTGATAGTGATGAATACAATGTGATGTACAGGGAAATAAATTGCAAGTGGAAACAGGGAGAAAGATCTGGGGCTATTATCATCTTCATCAAATCTCACCAACCAATCAAATCCTTTTAAAGATCATCACTCACTCATTCCAAGTGACATTTTGATTGACTTTTATGAAAATTATTGAAGCATGGGAAAAATGTAGGAAAATCCCTGATTTTCAGGGTACTCTATTTAATGTAGTACTTTTATCTTAATTTTTCTTCACCTTTTTTATTTTGGAAAATGTGGTGTACTGTTCTGTCTGGTGATGCAATATATAGAGTGAAGTTTCAGGAAACATCAGTTTGATGTGTACTGGTGGGACACAAATGTATATTATTTTGCTGCAATATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020253241.1	5.3e-51	B3 domain-containing protein Os11g0156000-like isoform X1
Swissprot	Q53QI0.1	1.1e-40	B3 domain-containing protein Os11g0156000
trEMBL	A0A5P1FGS6	3.8e-51	TF-B3 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G11580.1	44.30	8e-43	170		AP2/B3-like transcriptional factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04109	AT3G11580.1	237	76	8	23	210	5	234	44.30	8e-43	170
AfisC5G04109	AT5G06250.1	187	65	5	43	206	42	223	50.27	3e-42	168
AfisC5G04109	AT5G06250.2	202	65	4	43	206	42	238	46.53	3e-41	164

Ortholog group

Species	Genes
Allium cepa	g252269.t1
Allium fistulosum	AfisC5G04109
Allium sativum	Asa4G03379.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	47	139	97.1	4.1e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009873	P	ethylene-activated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010073	P	meristem maintenance
GO:0010358	P	leaf shaping
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080113	P	regulation of seed growth
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network