result

Gene information

Detail information of AfisC5G04237

Location

Gene	Chr	Start	End	Strand
AfisC5G04237	chr5	780656822	780658360	-

Sequences

CDS

Protein

Gene

>AfisC5G04237
TACATATAAAGATTGAAAATGGTTAACATTTCTTCAGGCTTTCTCTCCATATGCTTCTTCCACTTCTTTAGCCACAGTAATCATCAAATAAATATATACTGATTTTCTCATTTACAGTTAGCTCCGCATTATTGGGAGGGGTGTATAAATTAGTATCATTTGGGTCTTAGTCTCCATATTTCATATAGTATTGCTTTGTTTTAAACCATTCTCCTATTATATTAGTATGCTTCTACCATCCAAAGTACCTAGAAAAATACTCATTTGAAGCTTGAGATAATAACAAATTAAGTTGAGATAGATGGAGATGAATGCATCTAAAACAAATAGAGAATGGACTCAAATTGAAAATGATATATTTGAAAATGCACTGGCGCGCGTAGATAGTACGAGTCCAGACAGATGGGAGAGAGTGGCATATTTTTTGCCAGGGAGAACAGTGGATGAAGTAAAATCCCATTATAGTGAGTTGGAAGAAGATGTTAATGACATTGAAGCCGGTTTGATCCCATGTCCGGACTATACTTCTTTAATGATCCAAAGTGACATCGATGAGCAAGAGCAAACATTTTGTGTTCTAGGTAAAAGAGGGAGAGATTTTAATCAAGCTAGGAAGAAGGGAGTTCCTTGGACTGAAGAAGAACACAGGTATTGCAATTCATAATCATTTTCCTGTTCAAAGTATATTCTTCCTGTAAATTTGTTGGAATCTTTTATTTCACCATTATAGTATTATTATGAAAATTTTCATGATTATGAACAGAAATCCAAGCTTATTAGTTCTGCTGAAATGAATAATTTTAGACTGAGAACATTAAATAAAATTGGCTATTCTTGGGAAATAACTAATTAACTGCGAACGAAATGGTTAATTACAGACAATTTTTGTTGGGATTAAGCAAGCATGGCAAAGGTGATTGGAAGAGCATATCTCGGAATTTTGTGCTATCAAAAAATCCTACTCAGGTGGCTAGTCATGCGCAGAAATATTATAACAGACTCAACTCAAATGGCAATGATAAGAAGCGCGCCAGCATACATGATATTCCAATTGATTTTTCAAAAGAATATAGCACTTCGTCTGCATCGGTTATGGACGTAGATTCAAATCAAATTGAAGAAGAAACTAAGGTTTATGGTAATGGGTTAATGCAACTTAATTAAACAAATCAGCCTGGATTAAAATTGGAGAGTGAATTCATACAGAAGGGATCTACACAAATCTATGAAAGGTCATCACATGATGCTTATTTAAACACAAAGACTGAAATCTCCAATTCAGATTAATGTTCAAGAAAGTAATAGGTTTTGATTGTTACGTAATGTTATATTTATAGGTAGAAAATATTTCAGTGATGTACATATTTCTGGGGACATAAGAATTAGATGAATGTTTAAGCAAAGTAGTATTTTACAGACTCCCAGTACATGTTGCTGAGTCCATATGTTGATCTAAGTGATCTACCTAAGCATTTTTTGCTATGTAAGGCCATTGTTCAGTTCCTATGTAATTTGGTTTGAAGTCTATAATGAATTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	ARU86426.1	1.2e-52	DIVARICATA-like
Swissprot	Q8S9H7.1	1.3e-46	Transcription factor DIVARICATA
trEMBL	A0A835QP40	6.8e-53	Transcription factor DIVARICATA

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G38090.1	55.62	5e-49	190		Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04237	AT2G38090.1	178	63	3	11	172	28	205	55.62	5e-49	190
AfisC5G04237	AT3G11280.2	165	58	3	12	172	33	191	58.79	2e-48	188
AfisC5G04237	AT3G11280.1	165	58	3	12	172	33	191	58.79	2e-48	188

Ortholog group

Species	Genes
Allium cepa	g362103.t1
Allium fistulosum	AfisC5G04237
Allium sativum	Asa4G06391.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	11	54	26.3	5.6e-06
PF00249.28	Myb_DNA-binding	Domain	109	153	41.4	1.1e-10

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009630	P	gravitropism
GO:0009723	P	response to ethylene
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009793	P	embryo development ending in seed dormancy
GO:0009908	P	flower development
GO:0010114	P	response to red light
GO:0010116	P	positive regulation of abscisic acid biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030307	P	positive regulation of cell growth
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:1901001	P	negative regulation of response to salt stress
GO:1901371	P	regulation of leaf morphogenesis
GO:2000469	P	negative regulation of peroxidase activity
GO:1905615

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network