result

Gene information

Detail information of AfisC5G04312

Location

Gene	Chr	Start	End	Strand
AfisC5G04312	chr5	792694434	792696774	-

Sequences

CDS

Protein

Gene

>AfisC5G04312
AATTTCCGAACTATTAATGCTCCAAAATTTCACTGAAGGGATGAATATATAGTACTGAATCGTCTCTTATAATTTTAAAAATAATGTTTCGTAAGAATTTATGTACAGAAAAAGATAACTACTTTAATTATATATGTATAATAATTTAGTAATATAGCATTATATATATATGTGGTGTAATGCTATATAAATATATCATTATGTTGTTCTTCGGACTAAATTTTAAACTTTGTGTCCTTCCAGTTAAAATTGGCTTTGCTATGCTTAAGCTTTGAATAATCACTGTAAGTTTTTTCTATACCCATTTGAAGCATCTGTCTTGGATATAATTTTACAGTGAAAATAAATTTTCATTTCAATTTTCATAAGAAAAGATATTATGTGATTGTTTACAATGTGAAACGTTAAAACTAAAGATTAAATTTGTATGTTCACAATAAGAGTCTTAATTCCAATTGTTTTGAAAGTTTCCAGGAACAACAAACATTACACACATTATACATGCCATCCCTTCCAAATATGAAAATAAACTTATTTCGAAAGAAAAGTGGAGTACTACAAAATTTCTGCTCATTTGTCAGGCGATCAGTATGTTAAAATGAAGTGCTATCCTTTTCTACCACCTTTGTGTTTTCTATTAATAGCCTTCCCCGCACAGATCCAGGTAGTGGACATGGCCTTGCTTTTGTACTAACTCCAGATGCCAATTTCTCTTCTTCTTTATCATCCCAGTATTTAGGTCTCTTCAATACTGAAAACAACTGAAAAAAAGCAATAATATTCTTGCCGTTGAGCTCGACACAGTTTTAAATCCTGAATTTGAAGACATTAACAACAACCACGTGGGGATTAATTTCAATAGCTTGCAGTCTTTCAAAAGCACAACTGCGGGTTACTACGTTGATGGTACTAATTCTTTCAAGGAGTTGAATCTTAACAGTGGCAAACTAATACAAGTGTGGATAGATTTTAATGCTCTTGTTATGCAGCTAGATGTTACCATATCACCGGCGCATGATTATAAACCCAGTAAACCGCTTATAACCTACACCATTGATCTTTCAAGCTTTAAACTCACCATATACATAAATGGGGATTTAAGTTGAATAGTATGTCTGTGTCTCTTGACTCACCATCATTCAATTCATCACAAACACCTATAAATACAAAACACGGTTTGAATATTTTGTCTATATGGTTGCCTATATATAGTTTCTTGTTTAATTATAATATCGGTCGTTGCTTATGTCATATTTATCATTCAGAGGAGGGTAAAACATGACAAGATGGTAGAAGATTTGGGACTCCAATACGGTCCTCATCGATTTGCATACAAAGATTTGTATCGAGCAACTAAAGGGTTCAAAGAAAAGGAGTTACTTGGGTTCGGAGGCTTCGGCAGAGTCTACAGAGGTACATTGTCACGCAATATAAAAGTTGCAGTCAAAAGAATATCCCACGACTCAAAGCAAGGTATTAGAGAGTTTGTCGCTGAGATTCTCACTGCTGGCAAGCTCCGCCATCGAAATATTGTTCAACTACTAGGCTATTGCCGCCACAAAAATGAACTGCTCCTTGTTTACGACTATATGCCCAATGGGAGTCTTGATAAACTCCTACATGAAGAAGAAAGTTCAACTCTCAACTGGGCTCAGAGGTTCAAAGTCATAAAAGGAGTCGCCTCGGGTTTGCTATACTTACATGAAGGCTGGGAGCAAGTTGTAATTCATAGAGATATAAAAGCAAGCAATGTGTTGTTGGACAGTGAAATGAATGGAAGGCTTGGAGATTTTGGTCTGTCAAGGTTGTATAACCATGGATCAGATATACATTCTACACACGTGGCTGGAACAATAGGATATCTTGCACCAGTACTGGCAAGACCTGGGAAATTGACTACTGCAGCCGATGTGTTTGCATTTGGTGTGTTCCTTCTTGAGGTTGTGTGTGGAAGAAGACCGATCATTCGATGTGCGCAGGAAGAGGAGATGCTTTTGGTAGATTGGGTGTTAGCGAAATGGCAACGAGGTCAGGTTCTTACAGCGGTAGATTCAAGACTGGGAGATGATTATTGTGTAGATGAAGCAGAGCTAGTCTTGAAGCTTGGCTTGCTTTGTTTGAACCCGATGCACACAGCTAGACCGAATATGCGATCGGTGGTTCAGTTTCTGGATGGAGATAAGATACTCCCTGAGTTTCCATTAAGTTACTCGAGCATTCAGTCTTTGATTTTTGAATGACGAGGATTTCAATTGTACCACGGCGACATCTTCTGTGGCTGCTACTATTTCAAGTTTGTCAGGGGGGTATGTAATATATACACACACTAGTAGGTAGCCCG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256335.1	5.7e-126	L-type lectin-domain containing receptor kinase IV.1-like isoform X1
Swissprot	Q7XUN6.2	7.2e-118	Protein SALT INTOLERANCE 2
trEMBL	A0A6I9SHV6	6.5e-124	L-type lectin-domain containing receptor kinase IV.1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G53810.1	61.98	3e-111	398	LecRK-IV.2	Concanavalin A-like lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04312	AT3G53810.1	313	115	4	2	310	323	635	61.98	3e-111	398
AfisC5G04312	AT2G37710.1	304	111	3	9	309	330	633	62.50	2e-108	388
AfisC5G04312	AT3G55550.1	304	117	2	2	303	322	625	60.86	6e-108	387

Ortholog group

Species	Genes
Allium cepa	g475369.t1
Allium fistulosum	AfisC5G04312
Allium sativum	Asa8G02526.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	26	292	158.0	2.7e-46

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0002229	P	defense response to oomycetes
GO:0005773	C	vacuole
GO:0005576	C	extracellular region
GO:0004674	F	protein serine/threonine kinase activity
GO:0030246	F	carbohydrate binding
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005524	F	ATP binding
GO:0009555	P	pollen development
GO:0009751	P	response to salicylic acid
GO:0046777	P	protein autophosphorylation
GO:0090333	P	regulation of stomatal closure
GO:1900425	P	negative regulation of defense response to bacterium

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network