result

Gene information

Detail information of AfisC5G04313

Location

Gene	Chr	Start	End	Strand
AfisC5G04313	chr5	792796773	792797959	+

Sequences

CDS

Protein

Gene

>AfisC5G04313
CTTTTTCCTTTTTGCCTTTTCCGCTTATCTCCATTCATTTCCTCGGAAAAAATCTCATCTCTTTTCTTCCCCGTCCAAAAACCCTAACTTTCACCGGGCACACCAAAAATTTAATGATTTTTTCGTAATTGATGGAGGAAGGTTCGGATCCGATCCAAAATCTTGCAAACGAGCTCGACGACGATGGAAAAGTTTCGGAGTGGGAGGACGGCCTCCCAGACGACGACGATCTAACGCCGCTATCTCAGCTTCTGGTTCCTCCGGATCTAGCTTCCGCTTTCAGTATCACTCCCGAACCCATCCGCACGATTCTGGATGTCCACACCGCTTCTCAAAACACGTTGACTTCAATTCGGCGGAGCAATTCCGTCAATTCGAGTTCCGATCTGAAATCTGCATCTCCTGTTGACGATACAATGCTGACAGAAGATCCAGTTTCTCCAAGCGCTAAAAGATACGAAGGGGAAAACTCGAATTCTCCAGAAGATCTGGACAGCTCTTCTCAGGCTATGAAGCGGCCAAGGCTGGTATGGACTCCGAATCTGCACAGGAGGTTTGTAGATGTTGTAGATCACATAGGGATAAAGAACGCTGTTCCAAAGACGATTATGCAGTTGATGAATGTAGAGGGGTTGACAAGGGAGAACGTTGCTAGTCATCTCCAGAAGTACAGGCTTTTCTTGAAGAGAAAGCATGGATATTCTGGTGAAATTGACTCTGGATCGGATCCTTTGTTTGAATCTACACCTGCACCACAGCAGCAGCAGCAGCAGGGGATGCCTGTGCCAGTGCCTGTGCCTATGCCTTATGCTATGCCAGGAATGATGCCAGTGCCTATGTATGGGATGGTGCCGATGAATCATGGGCCTATTCATGGGTATGGAGAGCAGAGGACAAGCAAAGATTGGGGAAACAGGAGTAAGTTTAGTACCTCTGCTGTTAATTATTCTCATCATGTTAGTCCTAATGACAATTGAAATAAAAATTGGAAATTTGAAGTATTAATGTTATGTTGTTGGTAATGTGATTTACTACCGTCTTGAGTGATGTCTTCTTTGTGACATTTTAGCTTGCTTCTGTTGTAGACGTTGTTGTACTATATTAATATGGATTAGATGATTGGATTTAGATAATTTGTTTGTGCTTAAACAGTTGAACACAGGTTGATTTGCTAGCGGATTTGATTA

Functional annotation

Database	accession number	e-value	annotation
nr	GFZ01439.1	1.2e-50	homeodomain-like superfamily protein
Swissprot	Q9LTH4.1	2.2e-46	Protein PHYTOCLOCK 1-like
trEMBL	A0A6P3ZK87	8.6e-51	transcription factor PCL1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G46640.1	48.51	4e-56	214	LUX;PCL1	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04313	AT3G46640.3	268	106	4	17	258	15	276	48.51	4e-56	214
AfisC5G04313	AT3G46640.2	268	106	4	17	258	15	276	48.51	4e-56	214
AfisC5G04313	AT3G46640.1	268	106	4	17	258	15	276	48.51	4e-56	214

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	132	181	25.2	1.2e-05

Gene Ontology

Accession	Ontology	Name
GO:0000156	F	phosphorelay response regulator activity
GO:0000160	P	phosphorelay signal transduction system
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0007623	P	circadian rhythm
GO:0042802	F	identical protein binding
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009909	P	regulation of flower development
GO:0010082	P	regulation of root meristem growth
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031537	P	regulation of anthocyanin metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0080022	P	primary root development
GO:0080036	P	regulation of cytokinin-activated signaling pathway
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network