result

Gene information

Detail information of AfisC5G04335

Location

Gene	Chr	Start	End	Strand
AfisC5G04335	chr5	796645170	796648241	+

Sequences

CDS

Protein

Gene

>AfisC5G04335
ATGGTTCTCGATCCATTAGCCATGGATGGTTTAAGAATGGATGATTTTTACTCCGATCCAAATTCAGTGAATTCATTCAAATTTGAGGAGCAGGCAAATCCTTTTTTAAATCAGAATACTTACAGCAATTTTCAGTATGTGCCTTCAAGTTCGGTTTCTAGTCAAAGCAATCCTTCCTCTCTAAGTACAAATATTAGTAGTATCACCACAACTAGCAACAGTATTATTAGCAATAGCAACAATATTCATAGTAATGATATCGGATCACCTGAAGATTCTGAAGTTTTATCGGATATAGTTCTTAGTTACATTAGCAAAATGTTAATGGAGGAAGATGTGGATGACAAGGTTAATCTTATGTTTCAGGAAGAATCTGTTATTGAAGCAGCAGAAAAACCTTTTTATGATATTTTAGGCGAGAAATATCCACCATCCGATAGTAGTATTAGCAAAAATTTCATTACTGAGGCAGAATCCTATCACAATTCAGTAGATAATACTTCTCCGAACTCGCTTACGTCTTCATCTAACAGCAGTGTAGTTAATAATTCTCATGATAAGTTTATAAATATACTTGGAGAGAGTAGTCTTGCCTGGCAATTTAAAAAAGGAGCTGAAGAAGGACGGAAATTTCTTCCTAGTAATAATAAGCTTGTTATCGGCGGTGGGTTGCCTACCAATTTGTTGGTTGATGTGAAGGCTGAGGAGTATCAAGTTCAAGTACCAAGAGGTAGGAAAAAGACAAACATGGAGGATTTGGATCAAATCGAAGGCAGGAGTGTAAAGCAAACTGCAGTTTCTGCATCTTCCGAAGAAACCGTTCGAACTCCAATGTTTGATGTTATATTATTATGCCAAAGAGGAAAGAAGTGTGAGAATGGAGTAGATGCTCTAAGAGAAGCAATTCAAAAAACCAAGAGTTCACAAAATAGTGGCAATGGCTCAAATGCCAGGGCAAGAGGAAAGAAGCAGCAGAAGAAAGAAGTAGTGGATTTAAGAACATTGTTGGTGCATTGTGCTCAAGCAGTAGCTGCAGATGATCGAAGAAGTGCAAACGAATTATTGAAACAAATCAGACAGTATTCCTCACCATTTGGCGATGGTTGTCAAAGGCTGGCACATTGTTTTGCAGATGGACTTGAAGCTCGATTAGCTGGAACCGGTAGCCAAATCTACCATTCGCTTGTTGCTAAAAGAACAACTGCTTCTGACATATTAAAAGCTTATCAGTTGTATTTAGCAGCATGTCCATTTAAGAGAATTTCACATTTCTTTTCAAACCAAACCATAATAAATGCAACTGAGAATGCTTCAAGAATCCATATCATAGATTTTGGTATATACTTTGGTTTCCAATGGCCGTGCCTTATACAAAGATTATCAGGTAGACCTGTCCCACCCAAGCTTAGAATAACAGGCATTGACGTACCCCAACCTGGTTTCCGACCCACTGAGCGAATAGAAGAGACTGGTAAAAGATTAGCAGACTATGCAAGAAGCTTCAATGTTCCTTTTGAGTACAATGCAATATCATCTAAATGGGAAACTATTCGCGTTGAAGATTTGAAAATCGAGGAAGATGAGGTGCTTATAGTGAACTGCTTATACCGTTTTAGAAACCTTGTGGATGAAACAGTGGTGGTGGATAGCCCGAGGAATAGAGTGCTGAACACCATAAGGAAAACGAACCCGGATGTTTTCATTCACGGAATAGTTAACGGGTCGTACAGTGCTCCTTTTTTCGTGACCCGTTTCAGAGAAGCATTGTTCCATTTCTCAGCTTTGTTCGATATGCTTGAAACCACTGTGACCAGAGAGGATGCACAGAGGCTTCTGATTGAGAAGGATTTGTTTGGCCGTGAGGCATTGAATGTGATATCCTGTGAAGGTGCACAGAGAGTGGAGAGGCCTGAGACTTACAAGCAGTGGCAAGTCCGTAATTTAAGGGCTGGCTTTGCTCAGCTTCCATTGAATCCGGATATCATGAGAAGGGCAAAAGATAAAGTAATAGGTACATATCATAAGGATTTCGTCATAGATGAAGATAGTAAATGGTTATTGCAAGGTTGGAAAGGAAGAACCATATATGCTATCTCTACATGGAGGCCTAATTGAACTTGATGATTTGCCAAGTTATGACTTAAATTTTGGACTGCTAGCTTATGGACTAGTAGGAAAGGTGATCATACAACTTTTGGTTTTTATTTTTGTCATGTCAAACTTAGATATACGCCTAATGCTGTTATTGATGCAGGTGAGTTGGCCTAACCTAGAGAAATGTGTTTGTGGATGTAAATGACCTGTACTTCCTCTAATAGTGTTACTCATTAGAAGCGAACTTGGTGGTGCGATATTGGGGAAGATGTAAACTGTTATGTAGTGTAATTATAGCAGTAGTAGTTATGTTATGTACTTCTAATGTTTTTTGCTGGTTGTGAGTAGAATATTTATTGAACTTTTAAGAAGTTGAAATGGAGAATTATGTGTATGTTCTGCTGCCTTTTTGTTGCTTGTTATGGCCGATGTACCCACGCTTTTTGAAACTTCGCTTCCGGACAAATTCTACAGTGTAAAGATAGAAGAAGCAAGTGGTGTGTTGTTCTCCACGTCAGGAGCCTACAAAGGTTAGTGCTCTATTATAAAGTTAGGCTTTTAAGTGCTTGAACTCTTTTAGATAAATTCCTGGGTGCTGCAGTTGGTACACCGAAGGTACTATGGACATGTGCATGTACATGAACTGGGCCCAGGGAACCTAGCACAATTGTGGAGGCCGTGACTAGAAATGACAGTTGGGTTGGGTTTTTCATACTTCATACCCGACCTGTATTTATTAAACCCGCCTGCTTCGTAGACTCGGTTCGGGCCTAGATTTTTATCACAATCAAAGATGCGTACGGCTCAAGGTAAGATCCGACTTGTTTCCAAAGATGGTGCATCTTTGTATGTTTTGTTGGCTTGTATCATGATTTACATACACTAATATTTTTATGGAGATGGGAAATGGATTTAATAAATATATCGATTATAGATGATAATGGTTATACAATGAGAAGAAAAAACAAAATGTTCAAT

Functional annotation

Database	accession number	e-value	annotation
nr	QDL88530.1	1.5e-243	scarecrow-like protein 9-like isoform X3
Swissprot	O80933.1	7.9e-165	GRAS family protein 13
trEMBL	A0A835S4C0	2.8e-244	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G37650.1	48.57	5e-175	611		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04335	AT2G37650.1	665	270	11	90	703	71	714	48.57	5e-175	611
AfisC5G04335	AT2G29060.1	657	279	12	96	703	56	693	47.18	3e-162	569
AfisC5G04335	AT1G07530.1	593	249	11	147	704	186	767	50.25	3e-161	565

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	332	702	381.8	2.8e-114

Gene Ontology

Accession	Ontology	Name
GO:0003723	F	RNA binding
GO:0007165	P	signal transduction
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0009628	P	response to abiotic stimulus
GO:0009725	P	response to hormone
GO:0009791	P	post-embryonic development
GO:0010200	P	response to chitin
GO:0044434	C	chloroplast part
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network