result

Gene information

Detail information of AfisC5G04457

Location

Gene	Chr	Start	End	Strand
AfisC5G04457	chr5	817895482	817899829	-

Sequences

CDS

Protein

Gene

>AfisC5G04457
ATGTTGGATTTAAACATTGCATCATCCGAGTCATCGTCTTCCCAAATGGAGATCCAACCCAACAGCGTGGCGAACGAAGATTCCTCGAACTCAAGCTCCGTTTGTGAGGAGGATGAAATGGGCTTTCGATTCTTGAAAGGCCGTGAAGGAGAGGAGGAGCGATTCGTGACGAAGGAGTTTTTCCCGATGGAGAAGGCTGTGGCCAATGGTGAAGTTGCGGTGGAGGAGAGGAGTTATGTGGATCTAACGGTGGATAATCAACCACGTCAGCCACCGACTGTGAAAAAGAGCAGGAGAGGGCCGAGGTCGAAGAGTTCCCAGTATAGAGGGGTCACTTTTTACAGGAGAACTGGCAGATGGGAGTCTCATATTTGGTATTTTAAAAAACAGTTGCTTTTTCTACAATATAATGTGTTGTTCATGACTTAAAAATTTCTGAGGTATTTATATGAATTTGTGTAATCGTATACGAGTAAACATATTTATAACAATTTAGAAAACTGATCCATGAGTTCTTAATTGGGCAAAATTAAATAAGGTTGTGTAATTTTGGTATGAACATATATAAATAAGAATGATGAACTATAGTAAGACTGCTGTATAAGTCTGATAACTGTTACTACATTTAGTTGGAATGATTTCCATGTGATTTTTTTATGCAATTTTCTTGGATCTTATGCTAAATCAATATTTTGTGTTGATTTACCTAGGGATTGTGGTAAGCAGGTTTATTTGGGAGGGTTTGATACAGCTCATGCAGCTGCAAGGTTAGATTTCATGTTCAATATTTATGTTGTGGAGTATGAATTAATATTTTTCTTATTCTTTTCTTACTTATTTTTTGTATTTATAGGGCTTACGATCGTGCTGCGATTAAATTCAGGGGAGTTGATGCTGACATTAACTTTACAATAAGCGACTACGATGAGGATCTGAAGCAGGTTTTTTCTTTTTCTTTTTCCATTCATTTTATATCTTATTAGAGTTTAATTTTGTTATAACAGATGAATGACAACTATAGTACTGCAAAAACTTATGGGTTCAAATCACTACACTCAATCTATAGTCTCATGTACAATCTTTGTATTATAGGAATCTACTGGCTCTTAAAATTAGGAGGGTGGGTTTTGTTGCTTTTGGAAAAAAATATAATTTCTTACTTCTTTTTGTGATATCAGATGAGGGACTTATGCAAAGAGGAATTTGTTCACATACTCCGAAGACAAAGTACTGGATTTTCAAGAGGAAGCTCAAAATACCGAGGAGTAACACTTCATAAGTGCGGTCGATGGGAGGCACGCATGGGACAATTTCTTGGCAAGAAGTAAGCTGCTAATAACTTAATATTGTATTGTAGTATTTTTTTTTCCTTTCCTTATTTGATAAAATCACCCAAAATGCATGAAATAAGTCGTGCTTGTGAAGAGTGAGAGTAAAAAAAATGTTTTTAGAATCCAAACTTTTACCGATGTGAAGCTGATGCCTCAATGCAGGTACATTTACCTTGGGTTATTCAACAGCGAAATAGAAGCTGCAAGGTCCTATAAAAAAATTAAGATTTTAAGTAGATTTTTCAATAAATAGTTCATAGATTCAAATGCAAATCAATTGCCATAAATTAGTCTCCACTTTGTTACCAGGGCTTATGACAAAGCGGCTATCAAATTTAATGGAAAAGAAGCTGTCACTAATTTTGAGCCAAGCTCATATGAAGGGGAGGGCACTAGTGAAGGTATTAACTGTTGATATTTTTCACTATATCGATCTATGGTATATTTGCATGTTAATAATTTTTATCAAATGTTTTGATAGCTATTGGCCATGAGCTTGATCTGAATTTGCGAATTTCACAACCAAATGTCAGTAGCCCAAAGAAGAACGATAATCAAAAGGGTCTTCAGTTCAATTTTGGCACCTTAAATGCTTTTGATTCCAGAAGATCTGGGGTAATAATCCATCCCTTTTGCATAACTGGTGTAGCATATTTTTTTCATAAAACGTAGGTCTTAATCAGATGGGAGTTCTATGTGGTAATGAGTAAATTGAAGCAGGACTAATTTAAAACTCAGTGAAAACTTGGGGAATTATGTGCTGATGATTAAAACCTAATTTAACACTAAGTTACTTAGGTCAAAGTTTAAGGGGTCGTTTGGTTTATTTTGTATTTTATGTTTTGAGTTTTCAACATTAATTACAAAATATGAGAAGAATGAAGAGAGGTCGGAAGGGATGGAAGATTGGAGGGGACCACGAAGTGGATGGAGGAACGACGGAAAGAATGAATTGTTGCTCGTGCCTTCGTTTTTCTCAAAACACGAAAAATGAAAAAAAGTTGTTTTCTATTTTGTGTGTTAAATTCGTTTTCTAAAATGGTCATTTTTCATAATATACATGCGTTGTTCGTATTTTTGTATGGACGAAAACTCAAAACCAAAAACGGTAAACCAAACATAGCCTAAATTTTCCAAAAATACATCATCTTCCATGCAAGCTAATGATTTTGGTCAAATAACCAAAAATCTTTATCAATAAATTGTACTTGTTAAGTTTATTTGTCAGTACCATTTTCCAGATTGGCCACTCCTCATCAATTCGGATTGGTCAGCCACACAGCTCATCTATGACATCTGAGCATCATCATCAAGCATGGACTTATCCTTCTTTCTATCAAGCTAATGAGGTATATATATCTCAAACATATTATGTTTTCCTCAATTTTATTGGTCCAAGCATCATATTTGGATTTGAGTGGTTGATATGCTGCAATGGTCTGAACATTATCAAGTTTAGGCTTAGCATTTTCCAAAAATACTCCATTCTCCATATTTTATATGATTTCAAGTATCTTATATTAGGATAACTAGTGATTCACTTAAATTTTCTTCTCATAGTTTTCGTCTTGATGCCATTTTCATTGGAAGATGTCACAGACATGAGCTTGATTCTTGAATGTTCCTTAATTGAATAACATGGCAAAAAGTTCTTTATTTCTGTAACATTTAATCAATCAGGAAACGATTTAAACACACCTTATCATTAACTTATAATGTACACCACACGAAATAAGTAAATAGTAGATATCATGTAGACTGGATATTGTAGACATACAGTAGGCTGACTGAACGACCGTGCCTTGATATCATGCTAAACATTACAGTTTGATATACTTAATTATTAGCAGCCTGCACAGTTCAAAATGATACAGGCCAACAATCAGTTTACTATATTAGTTAACACGAGGGCCACCCACTAAAATATATTGGACTTGGCAGGTCTACATATTGCAAAATCTCTATGTTTCGTACAGGAATCTCATGATAAAATACAAAAATATCACCATAGTATAATTCAATTGATGGTTGCTTAATGCTTTTATGCATTATTGTCTGCTGTTCTGCTCCAGAAAGCACATGGGTATATTGTCACAGAATCATGATTGACTACATTGAAATGTAATGCAATCTGAGTTATCTACCTTCAAACTTTTCACGTATTGTGCTTAAAAATTTATGTATATAGGAAAGTGCGGCAGAGAAGAGACCTATGATTGGTTCAAATGTTGCTCCGAATTGGACGTGGCAAATGCCCGGGTCGAGCATGGGACCAACGCTTTTCTCTTCTGCAGCATCATCAGGATTCTCCACCACCACCAACACTTCTACAGCTGTAGCTCCTATTACTACTCATCACCTTCAGTTTCATCCCTCTACCAATTACTATTCTCGGAACTGAAGCTGAACTGGAGCACAAAATCATTCATACTTTTCAACATTGATGCGGTGTGTAAACCAACAACATATATTGTTTGCTTTCGTTATGTATATACACACCTCTACCAAAAGTTGGGAGACAGCGCTAAAGAAATAAATCAGGGTGATACATGCTTTTTTTTCCCTTCCCTTGATAGCTTATAAATGTATGTCTACTACATGTATTCTTATGTTTTTGCATTATGAGATGCATGTGCAGGTGTAATCTTTATAGTCAAAAACTTAGAAATTGGCCTATGTATATGGAGATGCCTTTTAAGTTTGTGCAATCTTTTGTGGTCACTATTTTAATGCTGTCCCTCTTTTATAACACTTGTTATTTGTTAATGGGCATGATGAGATGGTTAGCAGTGTAAGGTACAAAATGGGTAAAAACTGTCTATCAACTGCGTGTTATTTGAATGGATAAAGTTGCTATTGCCTGCATGCTGTATTTGACCCTAGTCATGGCTATCTTGCTTTTGTTAGGTTTAAATGCTTTTTCTGACTTATTCTGAGAATCGTTGCTGGCTTCCTGCATTCATTCTACTCGCATTTTCTTTGATTTTTTTTGTTTGTTATACTTCACTCTCAATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK62414.1	1.4e-124	uncharacterized protein A4U43_C07F3620
Swissprot	B8B8J2.1	8.7e-103	APETALA2-like protein 3
trEMBL	A0A5P1E9B4	1.0e-124	APETALA2-like protein 2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28550.3	51.56	8e-91	330	RAP2.7;TOE1	related to AP2.7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04457	AT2G28550.3	450	151	14	1	389	1	444	51.56	8e-91	330
AfisC5G04457	AT2G28550.1	450	149	15	1	389	1	429	48.67	3e-79	292
AfisC5G04457	AT4G36920.2	198	30	2	87	277	113	308	80.30	1e-78	290

Ortholog group

Species	Genes
Allium cepa	g344686.t1
Allium fistulosum	AfisC5G04457
Allium sativum	Asa6G04690.1; Asa6G04691.1
Arabidopsis thaliana
Oryza sativa	LOC_Os07g13170.1; LOC_Os07g13170.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	106	155	36.3	4.5e-09
PF00847.17	AP2	Domain	198	248	34.9	1.2e-08

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677	F	DNA binding
GO:0005730	C	nucleolus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009408	P	response to heat
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009658	P	chloroplast organization
GO:0009737	P	response to abscisic acid
GO:0009873	P	ethylene-activated signaling pathway
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010093	P	specification of floral organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019953	P	sexual reproduction
GO:0030154	P	cell differentiation
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048316	P	seed development
GO:0048481	P	plant ovule development
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09284	AP2; AP2-like factor, euAP2 lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network