Detail information of AfisC5G04464


Location
GeneChrStartEndStrand
AfisC5G04464chr5819260032819287673-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAGO33167.11.9e-99MYB transcription factor
SwissprotQ8RWU3.19.8e-53Protein LHY-CCA1-like 5
trEMBLR9YZ621.4e-99MYB transcription factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G09600.146.074e-57 218LCL5;RVE8Homeodomain-like superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag478818.t1
Allium fistulosumAfisC5G04464
Allium sativumAsa0G04391.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain196345.46e-12

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0001190Ftranscriptional activator activity, RNA polymerase II transcription factor binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005199Fstructural constituent of cell wall
GO:0005634Cnucleus
GO:0009409Presponse to cold
GO:0009651Presponse to salt stress
GO:0009723Presponse to ethylene
GO:0009734Pauxin-activated signaling pathway
GO:0009737Presponse to abscisic acid
GO:0009739Presponse to gibberellin
GO:0009751Presponse to salicylic acid
GO:0009753Presponse to jasmonic acid
GO:0009827Pplant-type cell wall modification
GO:0009845Pseed germination
GO:0009909Pregulation of flower development
GO:0010243Presponse to organonitrogen compound
GO:0010600Pregulation of auxin biosynthetic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0046686Presponse to cadmium ion
GO:0032922Pcircadian regulation of gene expression
GO:0042753Ppositive regulation of circadian rhythm
GO:0042754Pnegative regulation of circadian rhythm
GO:0043496Pregulation of protein homodimerization activity
GO:0043565Fsequence-specific DNA binding
GO:0043966Phistone H3 acetylation
GO:0048574Plong-day photoperiodism, flowering

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.