result

Gene information

Detail information of AfisC5G04478

Location

Gene	Chr	Start	End	Strand
AfisC5G04478	chr5	821086237	821088293	-

Sequences

CDS

>AfisC5G04478
ATGTCTAATTCGGATCCAAACCCGAAGAAGATTATCTTCAACAAGTACGAGCTTGGCCGCCTCCTCGGCTGTGGCGCCTTCGCCAAAGTCTACCACGCTCGCACCCTTCCTCACCCCAACACCACCGCCTCCTCCAACAACCACAACTCGACGACGAGCGTCGCCATCAAAATCATCTCCAAATCTCGAGTCGCCAAGTCGAACCAAGCACAGCACATCACCCGCGAAATGTCCATCCTCCGTCGCCTCCGCCACCCCCACATCATCCGCCTCATCGAGGTCCTCGCCTCCAAAACCAAGATCTTCTTCGTCCTCGAGTTCGCCAAGGGCGGCGAGCTCTTCGCCAAAATATCCAAACACGGTCGCTGCCCGGAGGACCAAACCCGCAAGTTCTTCCAGCAGCTCATCTCCGCCGTCGGCTACTGCCACTCCCGCGGCGTCTTCCACCGAGATCTCAAGCCGGAAAACCTTCTCCTCGACGAACACGGCGACCTTAAGGTCACCGATTTCGGGCTCAGTGCCCTCAACGACCAGATCCGAGCCGATGGAATGTTCCACACACTCTGTGGGACCCCTGCTTACGTGGCGCCTGTGATCCTCATAAAAAACGGCTACGATGGTGCCAAGGTGGATGTCTGGTCATGTGGCGTGATTCTCTATGTACTAAACGCAGGTTATTTACCTTTCAACGATCCCAATTTGATGAACATGTATAGAAAAATTTACAGAGGGGAGTACAGAGTACCCAAATGGACATCGCCTGAACTAAAAAGTTTACTTTCCAGACTTCTGGATACGAATCCAGAAACGAGAATTCGAGTTGATGAAATACTAGATGATCCATGGTTCAAAAAGGGACTGGACGAGAAGAAATTCAAAGATATGATGAGTTTTCATAACGAAGAAGAGAAAGACGAGGAGCTTAACTTTGAGGAGAGAGAAGTAAACGCGTTTGATTTGATCTTGATGTCAAGAGGGGTAAATCTGTTAGGGCTTTTCGAGACGGGGTCGGAGAAGGAGAGGTTCGTGACGGGGTTAGAAGAGGCGGAGGGTATTTTGGGAAAAGTGGAGGAGGTGGGGATGAGGGAGGGGTGTGTAGTGAAAAGGAAGGGGCAAAATGGGAAACTGGGGGTAGTGATGAGAGGGCGAAATGGTAATTTGGTGGCGATGGTGGTGGTTTACCGGTTGACGACAGGTGGATGTGCTGTGGTGGAGGTTGAGAAGGGGGACAGTAGGTGGGCCCAGGATTTTTGGAAAGAGAAGTTGAAATCGGTTTTTATTGTTGGTGCAGGACAGGTGGCCGGTGAAGGTTCGTCCAGTGACCGGGAAGAACCGGTTTTGTAG

Protein

Gene

>AfisC5G04478
AGTAAACGATTCCGTAGGTACATCGAACCAAACCATCTATTTAAATGGTAATTTCGTTATTCGTACTTTTCCAGTCCTCTACTGAATAATTTAACTTCCGTATTATTCAATTAAATACCTCTCCCTTCATTTAAATGTCATAAATCAAACCCAACATCAATCCTGTTGAAACGCCTTAAGAACCAAAATTCTCCAAATGTCTAATTCGGATCCAAACCCGAAGAAGATTATCTTCAACAAGTACGAGCTTGGCCGCCTCCTCGGCTGTGGCGCCTTCGCCAAAGTCTACCACGCTCGCACCCTTCCTCACCCCAACACCACCGCCTCCTCCAACAACCACAACTCGACGACGAGCGTCGCCATCAAAATCATCTCCAAATCTCGAGTCGCCAAGTCGAACCAAGCACAGCACATCACCCGCGAAATGTCCATCCTCCGTCGCCTCCGCCACCCCCACATCATCCGCCTCATCGAGGTCCTCGCCTCCAAAACCAAGATCTTCTTCGTCCTCGAGTTCGCCAAGGGCGGCGAGCTCTTCGCCAAAATATCCAAACACGGTCGCTGCCCGGAGGACCAAACCCGCAAGTTCTTCCAGCAGCTCATCTCCGCCGTCGGCTACTGCCACTCCCGCGGCGTCTTCCACCGAGATCTCAAGCCGGAAAACCTTCTCCTCGACGAACACGGCGACCTTAAGGTCACCGATTTCGGGCTCAGTGCCCTCAACGACCAGATCCGAGCCGATGGAATGTTCCACACACTCTGTGGGACCCCTGCTTACGTGGCGCCTGTGATCCTCATAAAAAACGGCTACGATGGTGCCAAGGTGGATGTCTGGTCATGTGGCGTGATTCTCTATGTACTAAACGCAGGTTATTTACCTTTCAACGATCCCAATTTGATGAACATGTATAGAAAAATTTACAGAGGGGAGTACAGAGTACCCAAATGGACATCGCCTGAACTAAAAAGTTTACTTTCCAGACTTCTGGATACGAATCCAGAAACGAGAATTCGAGTTGATGAAATACTAGATGATCCATGGTTCAAAAAGGGACTGGACGAGAAGAAATTCAAAGATATGATGAGTTTTCATAACGAAGAAGAGAAAGACGAGGAGCTTAACTTTGAGGAGAGAGAAGTAAACGCGTTTGATTTGATCTTGATGTCAAGAGGGGTAAATCTGTTAGGGCTTTTCGAGACGGGGTCGGAGAAGGAGAGGTTCGTGACGGGGTTAGAAGAGGCGGAGGGTATTTTGGGAAAAGTGGAGGAGGTGGGGATGAGGGAGGGGTGTGTAGTGAAAAGGAAGGGGCAAAATGGGAAACTGGGGGTAGTGATGAGAGGGCGAAATGGTAATTTGGTGGCGATGGTGGTGGTTTACCGGTTGACGACAGGTGGATGTGCTGTGGTGGAGGTTGAGAAGGGGGACAGTAGGTGGGCCCAGGATTTTTGGAAAGAGAAGTTGAAATCGGTTTTTATTGTTGGTGCAGGACAGGTGGCCGGTGAAGGTTCGTCCAGTGACCGGGAAGAACCGGTTTTGTAGCAACGCGATGATTGCAGCTTGTAAGTTATTTGGTTGTAAAATACAATGAGTTTTGCCAAGTAAATATTTTATACTGGATTCTTTAATTCTCTCAACATGGCTTATACTATACATAATGTGCAATTAAACATTGTCACATTAAACAATATATTAGGTTGTATGTATAACATTTCCACGCATTTTGACATGGCATAACCCAATTATTGTGAGGAAATAGATGGGAAAAAGGAAGAGACGTGGATTGAAAATGATTCACACGTGAAGATGGTAGAATGGTTCGTCACATGTAATCAAATAACGTATGCACAATTGTTTTTTAATTCCATTTGGAAAGCTGCTTTAATCATCGGAAATCAAAAGAGAAATGATACGTGTAAAAGTAGCAGTAATTACCCAAGAACTGTTATTTTCCAAATTAAAGGTTGCAGTATTCACAAGATTCCATCAACTGAGATGAATCGGCAAAATCATTAAATAAAGAAAGAGTTCTGTAGCCCACGTAGTTGCTGACCAAGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267461.1	2.3e-136	LOW QUALITY PROTEIN: CBL-interacting serine/threonine-protein kinase 14-like
Swissprot	Q9LZW4.1	4.3e-124	Serine/threonine-protein kinase SR1
trEMBL	A0A6I9R6B8	1.4e-135	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G30360.1	52.97	5e-124	441	CIPK11;PKS5;SIP4;SNRK3.22	SOS3-interacting protein 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04478	AT2G30360.1	438	176	10	12	439	17	434	52.97	5e-124	441
AfisC5G04478	AT5G01820.1	446	159	12	1	427	1	422	54.71	7e-118	421
AfisC5G04478	AT4G18700.1	448	184	7	7	423	17	449	48.66	6e-114	407

Ortholog group

Species	Genes
Allium cepa	g83860.t1
Allium fistulosum	AfisC5G04478
Allium sativum	Asa6G04703.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	16	283	223.5	2.7e-66
PF03822.11	NAF	Domain	315	368	45.4	6.1e-12

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0003729	F	mRNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005773	C	vacuole
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005516	F	calmodulin binding
GO:0005524	F	ATP binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009268	P	response to pH
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009506	C	plasmodesma
GO:0009737	P	response to abscisic acid
GO:0010150	P	leaf senescence
GO:0010540	P	basipetal auxin transport
GO:0016607	C	nuclear speck
GO:0018105	P	peptidyl-serine phosphorylation
GO:0018107	P	peptidyl-threonine phosphorylation
GO:0035061	C	interchromatin granule
GO:0042538	P	hyperosmotic salinity response

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11912	ppkA; serine/threonine-protein kinase PpkA	EC:2.7.11.1	Bacterial secretion system	ko03070
K11912	ppkA; serine/threonine-protein kinase PpkA	EC:2.7.11.1	Biofilm formation - Pseudomonas aeruginosa	ko02025

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network