result

Gene information

Detail information of AfisC5G04502

Location

Gene	Chr	Start	End	Strand
AfisC5G04502	chr5	826998963	827001606	+

Sequences

CDS

>AfisC5G04502
ATGGCAGCGGCGTTAGAATGCTGGTCAGGCCGACCCAGCACTGACGAAGAAATGATCGAACAAGTCCTCATGAAAAACTCCGACCGTTCAGAAATAATCACTTCTTCCTTCTCCGCTCCTCCTTCCCCTTCCCATTCCTCAATCTCTAACCTTCCTCCTAAAAAATGGCAGCGCTTCAGCAAAAACTTCACCACCACTCTCGCGAACTTAAAAAATAACTTGCTTGATTCCAACTCTCAAAGATTGGATAAGCATTTATGGGGCGGCGTTGTTAGAAGCTTAACTCAACTGTATCCTGGAAGTCAGTTGCCTGAAAAGCTCATTTCTGACATCAAAAGGCATTTTGATTCATTACCCAACAGCTATGCGCAAGCTGGGTTTGATGCGAAAGATGTCATGTTGCATGTGAGATTAATCGAGAAAGCACTGGCTGAAGACCAGCCAGCTCTGAATGTACAAGAAATAAAAAGTGATTCTGAAGAAGAAGAAGAAGAAATTGGATCTGTTTTGAAAATAAGCTTTGCTTGCAACTCTTCAGTTTCATGGCAAGCCATTTCTTGTTCACTAGATGGATCCTTGATTTGTTGCAAAAAGATTCAAAGTTTTGAGAAGAAAGGAGTTACACTTGGAGTTGTATCAGTTTTAGTCAACACAGGTAGTGAAAAGCAATTCATAGCAAAAATAGAAAGCTCAATTAGATCTGCAATTAAAAAGCCAAAGAATGGAGGAGTTAAGTTACCATTTGGGCTTTGTGGGCGCCAAGAAGAGAATGCAAAGAACATCGACTATGATATTGGTAATGTATACGATGCTGATCAAATTCAGCTATCATCACCTTTGCCTGAATCATCTGTTGTGATTTCAGTTGATGAATGGCAAACAGTTAAATCGGGTAGCGACGAAATTACTAGATGGATTATAAATTCTGAAGATATCGAGTTTCTAGAAAAGAAAGGGGCTAATTCATTCAGAGGGGTGTGTAGAGGCAAAAAGGTATGGATTAAGAAACTGAGAGGCTGCGAGAAAGGAAATGCTTATGAGTTTGAAATTAGGCAAGATTTGTTGCAACTAATGACTTGTGGACATAGGAATGTACTTCAATTTGTGGGTATTTGCATCGATGAGGTTAACGGGTTGTGTGTAGTAACTAGAATGATGGATTGTGGATCAGTGCATGATATGATTCAAAAGAATAGGAAAACAAATATGAAGGAAGTGATAAGGATTGCTTTAGATTTAGCTGTAGGGTTGATGTTTATTAATAGCCATGGAGTTGCTTTTAAAGATTTAAACACCCAAAAATTATTGCTAGATAGGCAAGGAAATGCTTTTCTTGGAGATATGGGAATTGTTACTTCTTGTAATAATGGTGGGGAGGTTACTGAGTATGAGACTGCTGGATATAGGTGGCTTGCTCCTGAGATAATAGCTGGAGATCCAGAAAGTGTAACGGAAACATGGATGAGCAACGTGTATAGTTTTGGGATGATAGTATGGGAAATGGTAACTGGAGAAGCTGCATACTCTTCATACTCACCTGTCCAAGCTGCAGTTGGTATTGCTGCTTGTGGACTGAGGCCCGATATTCCAAGGGACTGTCCCCAAATTCTGAGGTCACTAATGGTGAAGTGTTGGAATAATCGCCCTTCATTGCGCCCTACTTTTTCAGACATCATTTCTAGTCTACAAAAGCAAAACATTCGGTAA

Protein

Gene

>AfisC5G04502
CCACAGCGAAAAAACCTCAAAAGAAGATCCAACTATGGCAGCGGCGTTAGAATGCTGGTCAGGCCGACCCAGCACTGACGAAGAAATGATCGAACAAGTCCTCATGAAAAACTCCGACCGTTCAGAAATAATCACTTCTTCCTTCTCCGCTCCTCCTTCCCCTTCCCATTCCTCAATCTCTAACCTTCCTCCTAAAAAATGGCAGCGCTTCAGCAAAAACTTCACCACCACTCTCGCGAACTTAAAAAATAACTTGCTTGATTCCAACTCTCAAAGATTGGATAAGCATTTATGGGGCGGCGTTGTTAGAAGCTTAACTCAACTGTATCCTGGAAGTCAGTTGCCTGAAAAGCTCATTTCTGACATCAAAAGGCATTTTGATTCATTACCCAACAGGTAAATTTTTTTGAAATGCTTAAAGTTTGAATCTTGTGAGTTTTTACAGCGTATTTTTTACTAATTATTTTGGGGGTTATTTTTGGGTTTGTTTAGCTATGCGCAAGCTGGGTTTGATGCGAAAGATGTCATGTTGCATGTGAGATTAATCGAGAAAGCACTGGCTGAAGACCAGCCAGCTCTGAATGTACAAGAAATAAAAAGTGATTCTGAAGAAGAAGAAGAAGAAATTGGATCTGTTTTGAAAATAAGCTTTGCTTGCAACTCTTCAGTTTCATGGCAAGCCATTTCTTGTTCACTAGATGGATCCTTGATTTGTTGCAAAAAGATTCAAAGTTTTGAGAAGAAAGGAGTTACACTTGGAGTTGTATCAGTTTTAGTCAACACAGGTAGTGAAAAGCAATTCATAGCAAAAATAGAAAGCTCAATTAGATCTGCAATTAAAAAGCCAAAGAATGGAGGAGTTAAGTTACCATTTGGGCTTTGTGGGCGCCAAGAAGAGAATGCAAAGAACATCGACTATGATATTGGTAATGTATACGATGCTGATCAAATTCAGCTATCATCACCTTTGCCTGAATCATCTGTTGTGATTTCAGTTGATGAATGGCAAACAGTTAAATCGGGTAGCGACGAAATTACTAGATGGATTATAAATTCTGAAGATATCGAGTTTCTAGAAAAGAAAGGGGCTAATTCATTCAGAGGGGTGTGTAGAGGCAAAAAGGTATGGATTAAGAAACTGAGAGGCTGCGAGAAAGGAAATGCTTATGAGTTTGAAATTAGGCAAGATTTGTTGCAACTAATGACTTGTGGACATAGGAATGTACTTCAATTTGTGGGTATTTGCATCGATGAGGTTAACGGGTTGTGTGTAGTAACTAGAATGATGGATTGTGGATCAGTGCATGATATGATTCAAAAGAATAGGAAAACAAATATGAAGGAAGTGATAAGGATTGCTTTAGATTTAGCTGTAGGGTTGATGTTTATTAATAGCCATGGAGTTGCTTTTAAAGATTTAAACACCCAAAAATTATTGCTAGATAGGCAAGGAAATGCTTTTCTTGGAGATATGGGAATTGTTACTTCTTGTAATAATGGTGGGGAGGTTACTGAGTATGAGACTGCTGGATATAGGTGGCTTGCTCCTGAGGTATATAGCTTATCGAAATCACATTGACTGTATATCTTATAATTTTGCGTTATATTTAGCTTGTTCAAATTCACTCAGCCTCATACCGTAGTCTACACCACCACCTTTCTAACGTTGAATTCAGTTCGTGAGTTCAATATTTCATCATTGATGTGATGAACTTCATTACATGTTCACCAGTAAGAATGAGTGCATTGTCTCACACTCCTATAAGAGTCTAACATTTCTCTTAATAGTAAGTTGATAACCGACAACCACATTCATGAAAAAAAACAATTTTAACATAGTTAGTCAAAAATGAAAGACCTAGAGGATAAACTGGGGGATATATGTTTATCTCTAACATGTGCTCATACTTTGCACTACCATCATGGTTCGAATTATGCACTTTAACATGATAATATTATGAATATAACTATACCTTTAAACAAATTTATGTAGATAATAGCTGGAGATCCAGAAAGTGTAACGGAAACATGGATGAGCAACGTGTATAGTTTTGGGATGATAGTATGGGAAATGGTAACTGGAGAAGCTGCATACTCTTCATACTCACCTGTCCAAGCTGCAGTTGGTATTGCTGCTTGTGGACTGAGGCCCGATATTCCAAGGGACTGTCCCCAAATTCTGAGGTCACTAATGGTGAAGTGTTGGAATAATCGCCCTTCATTGCGCCCTACTTTTTCAGACATCATTTCTAGTCTACAAAAGCAAAACATTCGGTAAGAAATCTACATGCACATACATAGAAGAAGCTCTTCAATAATATTAAACATATTTGTGTATATTGGGATTCATAAAAGTGATGTTTTCCGATATTATGCTAGAGAGCCAGGCAAGGGCATTTGAGGTTTGGTTTCTGCTCTCTGTCAACATATCTTTACTTAGTAATAGATTACTGTCTTGGACTCTTGTTTAGTTATTTGCTGAGATGGGTACTTCAACTTTCCAAATAAAAATGAGTGATTTGTCGTGAATAATAAACATATGGGTCCTTATTAAATCTGTCTATGGCGTTGTGTATTCATCTTGGTTGTCGGGTTTTGGTGGTTGTATTCTCTTAGATTTGTGTAACATGAGTTTTGTTATTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010921005.1	9.9e-222	serine/threonine-protein kinase STY46
Swissprot	F4JTP5.1	9.5e-36	Serine/threonine/tyrosine-protein kinase 46
trEMBL	A0A6I9R621	7.1e-222	serine/threonine-protein kinase STY46

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G58520.1	52.56	0.0	634		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04502	AT5G58520.1	605	237	9	1	562	1	598	52.56	0.0	634
AfisC5G04502	AT5G07140.1	582	230	8	1	558	1	573	54.81	2e-176	615
AfisC5G04502	AT4G35780.1	273	163	8	298	564	281	543	34.43	5e-43	172

Ortholog group

Species	Genes
Allium cepa	g431376.t1
Allium fistulosum	AfisC5G04502
Allium sativum	Asa6G04744.1
Arabidopsis thaliana	AT5G07140.1; AT5G58520.1
Oryza sativa	LOC_Os03g18430.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	330	562	130.9	4.4e-38

Gene Ontology

Accession	Ontology	Name
GO:0000165	P	MAPK cascade
GO:0000166	F	nucleotide binding
GO:0005515	F	protein binding
GO:0002831	P	regulation of response to biotic stimulus
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0004871	F	signal transducer activity
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0005768	C	endosome
GO:0008219	P	cell death
GO:0009617	P	response to bacterium
GO:0009620	P	response to fungus
GO:0009628	P	response to abiotic stimulus
GO:0009658	P	chloroplast organization
GO:0009723	P	response to ethylene
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009966	P	regulation of signal transduction
GO:0033554	P	cellular response to stress
GO:0031323	P	regulation of cellular metabolic process
GO:0031347	P	regulation of defense response
GO:0032101	P	regulation of response to external stimulus
GO:0043168	F	anion binding
GO:0044093	P	positive regulation of molecular function
GO:0044431	C	Golgi apparatus part
GO:0045786	P	negative regulation of cell cycle
GO:0048522	P	positive regulation of cellular process
GO:0060173	P	limb development
GO:0060255	P	regulation of macromolecule metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0098542	P	defense response to other organism

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network