result

Gene information

Detail information of AfisC5G04510

Location

Gene	Chr	Start	End	Strand
AfisC5G04510	chr5	827811201	827812865	+

Sequences

CDS

>AfisC5G04510
ATGATGCAAAAGAGGAAAAACCCAACCAACAATCAAACCAAAACCAGGAATCCGGAAAAGAAATACGTAGGAGTAAGACAGCGTCCTTCAGGAAGATGGGTGGCCGAAATCAAAGACACCATCCAAAAGATCCGCGTCTGGCTCGGCACCTACGACACCGCCGAAGCCGCCGCACGCGCCTACGACGAGGCTGCTTGCATCCTCCGCGGGCCCCACACCCGCACCAATTTCTGGCCCCCTTCCGACTCTCCTTCAGCTTTACCCCCTAAAATATCCAATCAGCTCCTCCTTATGCTCAAATCCAAAAGCGCTACTAAAGCAGTGAATCGTGGATTCAGAGGTTCCGAAATCGATTCTTCTGTAGGTCAGTCGCCGATTTTCAATAGCATAGATGCCCCCTTTTCCGCTCCTTGCAGTATTATCGACTTCTCCAGTTATTTACCGGATGATGGTACAAAATTAGAATGTTTCGAACATAATTTGTATGTTCCTACTATGAACAGCACAAGTCCTCCTAGCTATAGTGGCGGTGGTGGTGATTGGACGGGGAGTGAAGAAATTGATGTTAGGGATTTTATGTTTGTGGACGAAATGGAAGGGTTATTTGGGGGTGATTTCTCGGCTTTTGAGATTGCAGAGGAAATAGCAACGGAGGAAGTGGAAGAGGAGGAGCCGGTTATGAAGAGGATGAAGTATGAACGGAGGGTGTCGGCTTCTTTGTACGCTTTGAACGGCGTTTCTGAGTGTTTGAAGTTGAAAGGTGAGCTTGGGGGTAATGCGTTGGAGGAGTTGAAGAGGTCCTGTGATAGGAAAATGAAAGTTATGTTGGTGGATGAGGAGAAGCTGCGTCCTGTAGAACAGTTAGACGACTCTTCTTCTTCTTCTTCTTCACCCTCTTTGTGCTCTTACAGTTCATCTTCTTTTTTTGGTGGGGATGAAGATTTAATGTCGCTGTGGACTTTTCTCGATCTTCCTCCTATCTGTGGGGGAGAACGTTAG

Protein

Gene

>AfisC5G04510
CTTTATTATTTAACATCACTCTACAAAATACATATATAAGTACCACTCCCCGTTCGAGTCGTTCATACCTTAATCCTTAACACGACGATAAAACAGGAAGTTAAAACAAAAAAGATAGTATAAGAAGATGATGCAAAAGAGGAAAAACCCAACCAACAATCAAACCAAAACCAGGAATCCGGAAAAGAAATACGTAGGAGTAAGACAGCGTCCTTCAGGAAGATGGGTGGCCGAAATCAAAGACACCATCCAAAAGATCCGCGTCTGGCTCGGCACCTACGACACCGCCGAAGCCGCCGCACGCGCCTACGACGAGGCTGCTTGCATCCTCCGCGGGCCCCACACCCGCACCAATTTCTGGCCCCCTTCCGACTCTCCTTCAGCTTTACCCCCTAAAATATCCAATCAGCTCCTCCTTATGCTCAAATCCAAAAGCGCTACTAAAGCAGTGAATCGTGGATTCAGAGGTTCCGAAATCGATTCTTCTGTAGGTCAGTCGCCGATTTTCAATAGCATAGATGCCCCCTTTTCCGCTCCTTGCAGTATTATCGACTTCTCCAGTTATTTACCGGATGATGGTACAAAATTAGAATGTTTCGAACATAATTTGTATGTTCCTACTATGAACAGCACAAGTCCTCCTAGCTATAGTGGCGGTGGTGGTGATTGGACGGGGAGTGAAGAAATTGATGTTAGGGATTTTATGTTTGTGGACGAAATGGAAGGGTTATTTGGGGGTGATTTCTCGGCTTTTGAGATTGCAGAGGAAATAGCAACGGAGGAAGTGGAAGAGGAGGAGCCGGTTATGAAGAGGATGAAGTATGAACGGAGGGTGTCGGCTTCTTTGTACGCTTTGAACGGCGTTTCTGAGTGTTTGAAGTTGAAAGGTGAGCTTGGGGGTAATGCGTTGGAGGAGTTGAAGAGGTCCTGTGATAGGAAAATGAAAGTTATGTTGGTGGATGAGGAGAAGCTGCGTCCTGTAGAACAGTTAGACGACTCTTCTTCTTCTTCTTCTTCACCCTCTTTGTGCTCTTACAGTTCATCTTCTTTTTTTGGTGGGGATGAAGATTTAATGTCGCTGTGGACTTTTCTCGATCTTCCTCCTATCTGTGGGGGAGAACGTTAGTTCTTTTACTTTTGCTCTTTTTCATCCTCGATACTTGTTGCATCAAACTTACATAGATCGGTGATTCCCTCCGATTAAGCCACCGGCGAGATCACTGAATCTTGACGGTCTACTCTTTTGAAATTGTGGGAATTAGGCTAATAGAATGCTGTGCTCCGATTAACACATAAAGTCCACTGAATAGTCATTTGTGAATAGTACCCGGAAGTACTTATGTTAAAAGAAAAAAAAACAACAACATCGAAATCAAAGTTCTTTTCATTTCCATGGTGAAATTGAAATTTTAAGAAGTTTGGATGCTATATAAAATATGAAAAAACGGATGAGTAAAAAAAAATGTACAAACCGAATACTATAGCCAAACAGTTACTACTCGATGGGGCTAATAGTAGCACTCGAATGTCTTCTTTTTGGAGCATGGACATGTCGACTGATACTTTTGGATGCGAATAGTGTTTTATTCGTATTTGAAATCATTTTCGAATATCCGCATCCGTGGATACAGAAGGATATCGAATTATTATCCTATCCGCTAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	KVH92675.1	3.1e-50	AP2/ERF domain-containing protein
Swissprot	A2Q5W1.1	3.1e-26	Protein ERF REQUIRED FOR NODULATION 1
trEMBL	A0A103XKW9	2.3e-50	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G19790.1	65.85	8e-25	111	RAP2.11	related to AP2 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04510	AT5G19790.1	82	28	14	95	14	95	65.85	8e-25	111
AfisC5G04510	AT4G23750.2	71	31	7	77	107	177	56.34	2e-18	89.7
AfisC5G04510	AT4G23750.1	71	31	7	77	107	177	56.34	2e-18	89.7

Ortholog group

Species	Genes
Allium cepa	g208969.t1
Allium fistulosum	AfisC5G04510
Allium sativum	Asa6G04732.1; Asa6G04734.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	21	70	51.6	7.3e-14

Gene Ontology

Accession	Ontology	Name
GO:0000302	P	response to reactive oxygen species
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0006970	P	response to osmotic stress
GO:0042802	F	identical protein binding
GO:0009414	P	response to water deprivation
GO:0009749	P	response to glucose
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0035865	P	cellular response to potassium ion
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048528	P	post-embryonic root development
GO:0048825	P	cotyledon development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network