result

Gene information

Detail information of AfisC5G04583

Location

Gene	Chr	Start	End	Strand
AfisC5G04583	chr5	838749216	838751137	+

Sequences

CDS

>AfisC5G04583
ATGAAGTCGCCAAAGCAAATCACAACCCAAAACGCAATCCAAACACCCGCACTCCTATACGAACCAACCTCGGTCCTAGACCACCACCTGACCTCCAGCCCCGCCGCTGCCACCACAGCCCCGACCCTCTTCACCCAAAACCCGACCTCCGACGACAGCTGGGATCCCCTTTCCTTCTTCGACACCCCTGAAAACTCCAACTTCATAATAAACTCCCTCGACCTCTCCGATCTCGACCCCCTTCCCCCATCCACCACCACCACCCCCTTCGACAAATTTCACCTCGACCTCCTGCTCAAAGCCGCCTCCTCCATCGAGTCCAACGACCTCCATACCGCCCACTCCATCCTCTCCCGCCTCACCCAAACCTGCAGCTTCGACTCCACCTCCAACACCACCATCCTCACCCCCCTCCTCCGTGTGTCCTTCCACTTCAAAGACGCCCTCCTCTCCCTCCTCCCCATACCCAACCCCCCCACCCCCACTCCCCCTGTCTCTCCCTATGAGATCGTCACCCGCATCACCGCCCACAAGTCCTTCTCTGACCTCTCCCCCATCCCTCAGTTCACCAGCTTCACTGCCAACCAAACCCTCCTCGAATCCCTGTTCCAACACCCCTCCCCTCAGGCCATCCACATCGTCGACTTCGACATCGGCCTCGGTGGCCAGTGGTCCTCCTTCACCCAGGAGATCGCCTCCCGCAGCAAGGCCCTGCGCGTTCCCCCTCCCCGTATACGGATCACGGCTGTCGTCCCCGACGAGACCAACGAGACCGTGCTCGCAGCAGAGAACCTGCGCGACTTTTCACGTGCGGTGGGCGTGCACCTTACTGTCGGGTTCGTGAACGTTAGCACACTCGGTACGCTGGCCCTCGGCAGAGTGCGCGTGCTGTCTGGGGAGACGGTCGGAGTTGTTCTGACGCCGAACGTGTTCCGGCTCATTGGTGGGACAAACGAGTCCAGGACTGCACTGCTGCGGTTCGTCAAGCAGATTTCGCCCAGGATTGTGGTTTTCGTGGACACAGAGTGCTACGAGGCTTCGTGTTCGTTCAGGAGGAGCTTTGCTACAGGGCTGGAGTTTTACTCGACTGTTTTAGAGTCCATTTATGCAGCCGCTGGGAGCGAGGAGGAGGAGGAGGTGAAGAGGGTGGAAAGGGCAGTGATCAGGCCTAAGGTGTTTGGGGCAGTAGTAGGATGGGCCCCGGGAGATATGACATGGTCAGAGGTTTTGGGAAGGGAGGGGTTCGGGATGGTGGGGTTTAGTGAGTTCACGGAGTCGCAGGCGGAGTGGCTGCTTAGACTGGGGCCGGTGGAGGGTTTCCAGGTGGCGAGAAAGGACGGGTCCATGGTGCTGAGCTGGCGGGGAAGGGATATTGCTGCTACGTCAGCCTGGAGGTGTTAG

Protein

Gene

>AfisC5G04583
CTTGAAATCCGCAGACAAATCAAAACAAAAGCAGAAGAGAGTCCCCCAGCAAAAGAAGAAAAAGGCAAAAACCCCAAGAAGCAGTTCGTTTAATGAAGTCGCCAAAGCAAATCACAACCCAAAACGCAATCCAAACACCCGCACTCCTATACGAACCAACCTCGGTCCTAGACCACCACCTGACCTCCAGCCCCGCCGCTGCCACCACAGCCCCGACCCTCTTCACCCAAAACCCGACCTCCGACGACAGCTGGGATCCCCTTTCCTTCTTCGACACCCCTGAAAACTCCAACTTCATAATAAACTCCCTCGACCTCTCCGATCTCGACCCCCTTCCCCCATCCACCACCACCACCCCCTTCGACAAATTTCACCTCGACCTCCTGCTCAAAGCCGCCTCCTCCATCGAGTCCAACGACCTCCATACCGCCCACTCCATCCTCTCCCGCCTCACCCAAACCTGCAGCTTCGACTCCACCTCCAACACCACCATCCTCACCCCCCTCCTCCGTGTGTCCTTCCACTTCAAAGACGCCCTCCTCTCCCTCCTCCCCATACCCAACCCCCCCACCCCCACTCCCCCTGTCTCTCCCTATGAGATCGTCACCCGCATCACCGCCCACAAGTCCTTCTCTGACCTCTCCCCCATCCCTCAGTTCACCAGCTTCACTGCCAACCAAACCCTCCTCGAATCCCTGTTCCAACACCCCTCCCCTCAGGCCATCCACATCGTCGACTTCGACATCGGCCTCGGTGGCCAGTGGTCCTCCTTCACCCAGGAGATCGCCTCCCGCAGCAAGGCCCTGCGCGTTCCCCCTCCCCGTATACGGATCACGGCTGTCGTCCCCGACGAGACCAACGAGACCGTGCTCGCAGCAGAGAACCTGCGCGACTTTTCACGTGCGGTGGGCGTGCACCTTACTGTCGGGTTCGTGAACGTTAGCACACTCGGTACGCTGGCCCTCGGCAGAGTGCGCGTGCTGTCTGGGGAGACGGTCGGAGTTGTTCTGACGCCGAACGTGTTCCGGCTCATTGGTGGGACAAACGAGTCCAGGACTGCACTGCTGCGGTTCGTCAAGCAGATTTCGCCCAGGATTGTGGTTTTCGTGGACACAGAGTGCTACGAGGCTTCGTGTTCGTTCAGGAGGAGCTTTGCTACAGGGCTGGAGTTTTACTCGACTGTTTTAGAGTCCATTTATGCAGCCGCTGGGAGCGAGGAGGAGGAGGAGGTGAAGAGGGTGGAAAGGGCAGTGATCAGGCCTAAGGTGTTTGGGGCAGTAGTAGGATGGGCCCCGGGAGATATGACATGGTCAGAGGTTTTGGGAAGGGAGGGGTTCGGGATGGTGGGGTTTAGTGAGTTCACGGAGTCGCAGGCGGAGTGGCTGCTTAGACTGGGGCCGGTGGAGGGTTTCCAGGTGGCGAGAAAGGACGGGTCCATGGTGCTGAGCTGGCGGGGAAGGGATATTGCTGCTACGTCAGCCTGGAGGTGTTAGATGGTGAATGCGGTAGTTTTTAAAATGTGAATTAAACTGCATTCGCCTTTATTATTGCTGGAGCCAAATTATATATCTAATAACTGAAGCAAACGTTGTGTATTCGATATTCCGGTTGTGGGTAAAATGGGATTGGCAGCATTGGCTATGGTGATACGGATGACTAGGGTATGTTAATTTTAGTCTGTTTTACGATAGTACTTTAGTCTGTTTGGGTGCATTTTTAATTTTGTTTCAATATGCTGACGTAGGTGAATAGAAAAGGCAAATAATGCCTCCGTCGTGATTGGATAATGGAATATTGAATGGAATTTATATAAGTTTGTTTCTACCTATGGCTATAGTCATTGAATTTGTCACTTTGTAACCAACTTGTGCATAGTTTTATTGCATGTCATTAGCTGGAATTGGATTGAACATAATGCATCA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010905080.1	8.7e-115	scarecrow-like protein 15
Swissprot	O23210.3	1.2e-57	GRAS family protein 25
trEMBL	A0A6I9Q893	6.2e-115	scarecrow-like protein 15

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36710.1	38.29	9e-62	234	AtHAM4;HAM4	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04583	AT4G36710.1	410	218	10	64	465	103	485	38.29	9e-62	234
AfisC5G04583	AT4G00150.1	392	227	11	82	466	193	555	32.91	2e-49	193
AfisC5G04583	AT2G45160.1	393	224	14	95	466	269	640	32.32	8e-45	178

Ortholog group

Species	Genes
Allium cepa	g105413.t1
Allium fistulosum	AfisC5G04583
Allium sativum	Asa6G04801.1
Arabidopsis thaliana	AT4G36710.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	96	465	249.3	5.2e-74

Gene Ontology

Accession	Ontology	Name
GO:0004402	F	histone acetyltransferase activity
GO:0005488	F	binding
GO:0009416	P	response to light stimulus
GO:0030154	P	cell differentiation
GO:0044260	P	cellular macromolecule metabolic process
GO:0044424	C	intracellular part
GO:0048731	P	system development
GO:0050789	P	regulation of biological process
GO:0090304	P	nucleic acid metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network