result

Gene information

Detail information of AfisC5G04981

Location

Gene	Chr	Start	End	Strand
AfisC5G04981	chr5	910849153	910851393	-

Sequences

CDS

>AfisC5G04981
ATGATCGATCCATTTCTGTTCAGCTCCGACTCCGAACCTTCATCTGCACCTGAACTCGACAACCTCTTAGCAGGCGCAGGTTACCGCGTCCGGTCTTCCGACCTCCGCCACGTGGCACATTCCCTCGAACTCCTAGATTCCGCCACGCTGGTACCATCCGACCCTTCCCCTTCGAACGGCGTCCACTACAACCCCTCCGACCTCACCGCCTGGGTCGACTCCATGCTCCAGGACGCCTCCCCCTCCTCCCCTTCCTCATCCTGCCGTCCATCCTCCACGTGTACGCACCAGATCCATCCACCTTCGAACAACCACTCCAACCTTCTCCACCTCGACAGCGAAGAGGACACCGGCATCCGTCTCATCCACCTCCTCATGACCTGCGCTGACTCCATCCAGCGCAACAATCTTCACCTCGCTGTCTCCTTAATCGAAGAGATGAAGCTAGTCTTAACCCGCGTCAACGCCGGATTCGCCATCGGCAAGGTCGCCGGATGCTTTCTAGACGCCCTCAGCCGTCGGATCTACAACAGCCCCAATCTAAGCCGTTTCAATTCCTCAACCGAGTTCGAATTGCTCTATCACCACTTCTACGAGGCTTGCCCTTACTTAAAATTCGCACACTTCACCGCGAACCAAGCTATTCTAGAAGCTTTTGAAGGCCAAGACTGCGTCCACGTCATAGATTTCAATCTTATGCATGGATTGCAGTGGCCGGCCCTAATTCAAGCCCTAGCGATACGGCCTGGCAGGCCGCCCTTTTTGAGAATAACGGGTATTGGGCCACCCTCGCCCGATGGGCGCGATTCGCTCCGCGAAGTCGGGTTAAGGCTGGCCGAGCTGGCCCGGTCACTAAACGTCCGTTTTGCCTTTAGAGGAGTTGCGGCAAACCGATTAGACGATGTGAAGCCTTGGATGTTACAGGTGGCGGCTGGAGAGGCCGTGGCAGTTAATTCAGTCATGCAGCTGCATAAGCTGGTAGGTGATTCGGGTTCTGGGTTTCCTGACCCGATAGATACGGTTCTGCACTGGATAGTTGGCTTGAAACCCAAAATCGTGACCGTCGTGGAGCAGGAGGCGGACCATAACAAACCAGTTTTCTTAGACCGGTTCACGGAGGCATTGTTTTATTATTCCACGGTGTTCGATTCGTTAGAAGTGAACAGATTTCAGCAAAGTAACCAGTTAGCAGAGGTGTACCTGCAGAGGGAGATATGCAACATAGTGTGCTACGAAGGGGTGGAAAGAGTAGAGAGGCATGAGCCGCTGGTGAAGTGGAGGGAGAGATTGGGCAGGGTCGGGTTGGAGCCGGTCCATCTGGGTTCGAATGCGTATAAGCAAGCAAGCATGCTTCTGACGTTGTACTCAGGAGAAGGGTACGGGGTGGACGAAGTGGACGGGTGTTTGATGCTTGGGTGGCATAGTCGGGCTCTGATATCAGCGTCAGCATGGCGGGTCCATGAGGATGACGTGGCGGGTGGGAGTTGTTTTGGGAATGGGAGTGAGAATAACATTAATGGGAGTAGCAGTAGCAGCGGGTGTAATAATAGTAGCAATGTCAGTAACCTGCTGTAG

Protein

Gene

>AfisC5G04981
TTCTCCTTACATCACCCACTCTCCTCTTCCCTAAATCTCCCAATCCATCATCAATTTCATCTCCCTCCTGCTCTTTCTTCCTTCCGAAATCTCCTTTTTTTTATTTATAATAATATCCAAAATTGAATAAAATGATCGATCCATTTCTGTTCAGCTCCGACTCCGAACCTTCATCTGCACCTGAACTCGACAACCTCTTAGCAGGCGCAGGTTACCGCGTCCGGTCTTCCGACCTCCGCCACGTGGCACATTCCCTCGAACTCCTAGATTCCGCCACGCTGGTACCATCCGACCCTTCCCCTTCGAACGGCGTCCACTACAACCCCTCCGACCTCACCGCCTGGGTCGACTCCATGCTCCAGGACGCCTCCCCCTCCTCCCCTTCCTCATCCTGCCGTCCATCCTCCACGTGTACGCACCAGATCCATCCACCTTCGAACAACCACTCCAACCTTCTCCACCTCGACAGCGAAGAGGACACCGGCATCCGTCTCATCCACCTCCTCATGACCTGCGCTGACTCCATCCAGCGCAACAATCTTCACCTCGCTGTCTCCTTAATCGAAGAGATGAAGCTAGTCTTAACCCGCGTCAACGCCGGATTCGCCATCGGCAAGGTCGCCGGATGCTTTCTAGACGCCCTCAGCCGTCGGATCTACAACAGCCCCAATCTAAGCCGTTTCAATTCCTCAACCGAGTTCGAATTGCTCTATCACCACTTCTACGAGGCTTGCCCTTACTTAAAATTCGCACACTTCACCGCGAACCAAGCTATTCTAGAAGCTTTTGAAGGCCAAGACTGCGTCCACGTCATAGATTTCAATCTTATGCATGGATTGCAGTGGCCGGCCCTAATTCAAGCCCTAGCGATACGGCCTGGCAGGCCGCCCTTTTTGAGAATAACGGGTATTGGGCCACCCTCGCCCGATGGGCGCGATTCGCTCCGCGAAGTCGGGTTAAGGCTGGCCGAGCTGGCCCGGTCACTAAACGTCCGTTTTGCCTTTAGAGGAGTTGCGGCAAACCGATTAGACGATGTGAAGCCTTGGATGTTACAGGTGGCGGCTGGAGAGGCCGTGGCAGTTAATTCAGTCATGCAGCTGCATAAGCTGGTAGGTGATTCGGGTTCTGGGTTTCCTGACCCGATAGATACGGTTCTGCACTGGATAGTTGGCTTGAAACCCAAAATCGTGACCGTCGTGGAGCAGGAGGCGGACCATAACAAACCAGTTTTCTTAGACCGGTTCACGGAGGCATTGTTTTATTATTCCACGGTGTTCGATTCGTTAGAAGTGAACAGATTTCAGCAAAGTAACCAGTTAGCAGAGGTGTACCTGCAGAGGGAGATATGCAACATAGTGTGCTACGAAGGGGTGGAAAGAGTAGAGAGGCATGAGCCGCTGGTGAAGTGGAGGGAGAGATTGGGCAGGGTCGGGTTGGAGCCGGTCCATCTGGGTTCGAATGCGTATAAGCAAGCAAGCATGCTTCTGACGTTGTACTCAGGAGAAGGGTACGGGGTGGACGAAGTGGACGGGTGTTTGATGCTTGGGTGGCATAGTCGGGCTCTGATATCAGCGTCAGCATGGCGGGTCCATGAGGATGACGTGGCGGGTGGGAGTTGTTTTGGGAATGGGAGTGAGAATAACATTAATGGGAGTAGCAGTAGCAGCGGGTGTAATAATAGTAGCAATGTCAGTAACCTGCTGTAGCAGGAGGAGCAGAATTGTATAGGTGATATGTATATCATTGGCAGCTTAAATTTGATGTATATCAGTTTTATTCACCGGTCTTTATCGTATTCATGGTTGGCCCAGAATCAAAATTTTCTCTGTGTTTAGCCTTTCTGGTTTTATGAAACTGTGTGCTGCTTTTTACGAAATCAGATGATAAAACTATAGAGGAAGAGTCTGGCTTCATAGAGAACTACAAATGCCACTCCCAATGCCACACTTTTTTATTATATTTAATGGGAAGAGCTGCAAGAAGGTGTGCACCATTTTTCTTTTTAATATCTTGACACGCTGAAAGGAAAATGAAGTGCATACATGCATATATTTTTCATATTTGATTGGAAAATGCTCAACTAATTTGGGTAGTCGTGTTTAATTTGATCTGTGATTGATATATTTGGACGTTGTTCTTTGAACTTGTAAAATAATATGATGAGAAATTGCAAAAACCAATAAGACAGGAAAGGTAGCTGCAATCACTCGTATAAACAAAGCTGATAAAGCTGTAATTATC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008777332.1	1.4e-177	DELLA protein GAI-like
Swissprot	A0A396IUP1.1	1.2e-122	DELLA protein 1
trEMBL	A0A8B7BI53	1.3e-177	LOW QUALITY PROTEIN: DELLA protein GAI-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G14920.1	47.77	4e-125	445	GAI;RGA2	GRAS family transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04981	AT1G14920.1	515	211	12	19	486	27	530	47.77	4e-125	445
AfisC5G04981	AT1G66350.1	494	220	10	16	487	28	508	48.38	4e-118	422
AfisC5G04981	AT2G01570.1	380	155	7	111	486	212	582	55.79	2e-115	413

Ortholog group

Species	Genes
Allium cepa	g164202.t1
Allium fistulosum	AfisC5G04981
Allium sativum	Asa6G05069.1; Asa6G07138.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g45860.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12041.5	DELLA	Domain	20	81	69.4	1.6e-19
PF03514.11	GRAS	Family	121	485	419.8	8.3e-126

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006808	P	regulation of nitrogen utilization
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010187	P	negative regulation of seed germination
GO:0010218	P	response to far red light
GO:0010233	P	phloem transport
GO:0044212	F	transcription regulatory region DNA binding
GO:0033206	P	meiotic cytokinesis
GO:0042176	P	regulation of protein catabolic process
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:2000033	P	regulation of seed dormancy process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network