result

Gene information

Detail information of AfisC5G05163

Location

Gene	Chr	Start	End	Strand
AfisC5G05163	chr5	944493511	944496975	+

Sequences

CDS

>AfisC5G05163
ATGACGGTCGAGAAAGAAAACAAAGTTGAAGAAGGAATCAACAGTTGTGTGTTAGTCGGAATTCAAATTGACGAAAATGGAAAAGAGTTACTAAATTATGCTCTGAATAATGCAATTGAAGAAGGAGATAGAGTTGTTGCTCTTTATATTTCGCGCAGTTCAGATCTTGGTACGAGCACTCAAACCTCAATTAAAGCACTAAACAACTTTTTAGTAGAGTATGAAGAACTCTGTAGGTCGAAAAAGGTTACTCTTACCGGTCGCGTTGCTCGAGGAATTTCTATAAGAAGAACAATAGTTAAAGAGGCAGCACAATGTAACGCGAAAAAAGTTATTGTAGGAAGAAACACAAATATTGCTCTTGGATGCTCTGCGTCAGTGGCCAAATATTGTTTGAAAAAATTACCCCCTACCACTACTTTAATTGCCTTCCATAATGGAGAAGTTTTTCTTCAGAGATTGTCCCAAAAGCCTTCTCATCAAGCCGAAACTCCAAAGCAGAACCTTGGAAGTATACTGCATCCCAACATTGGCTTATCCACCGAAGACAACGAAGAATATGAAAATGATAGGTGTCTTATTGTAGTAAGAAAACAACCTGAAATAAAACCTGGTTGGCCATTACTAAGGAAAGCAATAAATGCAAACATGGAAACGTCAAAAGAAACCGAAGCTCGTAAAATGTCAGTGGTTCAATGGGTCATGAATTTACCCGATCGATCATCGTTGTCTGTTAAATCCCCCACTTCAGATTTAATTAACGAGTTGGAAACCATTCTCAGTAAAAATTCCTCCACTTGCAAATGGTTTCAGTATGAGGAGTTACAGCTTGCTACCAACTATTTTTCAAAAGATTATTTGATTGGAGAAGGCGGTAGTAGTCGAGTTTACAAAGGATGTCTTGCTAATGGAGATAAAATAGCTATCAAGCTATCAAAGTTATCGAATGAAACATCCAAAGATTTTCTTTTGGAAGCTGATATAATTACTAAATTGCAACATGAACGTATCGTTCCTTTGTTGGGAATTTGTGTTGAATGCAATACGTTTCTTTCGATTTATGGTTATTTCTCCAAAGGAAGTTTAGAAGAAAATCTACATGGAAATAAAGTAAAAACTCCATTAGCCTGGGATAAAAGATTTAAAATAGCAGTTGGTGTAGCCGAAGCATTGAATTATTTGCATACAGGTTCATCTGAATCAGTTGTGCATAGAGATGTTAAATCTTCAAATATTCTTCTTAATGACAAATTTGAACCTCAGTTGTCTGATTTTGGACTAGCTGTGTGGGCACCGAAGAATCCATCGTCTCAGACTCAAAGTGACATTGTAGGGACATTTGGATATCTTGCACCTGAATATTTCATGTATGGTAAAGTTAGCAGTAAGATCGACGTCTATGCATATGGTGTTGTTTTGCTTGAATTATTGACTGGTAGAAAACCAATTTCTGACGACAGTCCTAAAGGCCAAGAGAGCTTAGTTATGTGGGCCATACCAAGACTAGAGAAAGGAGATCTGAACGAATTTTTGGATCCAAACATTAACGGAAATTTCGAAGAGAAGCAAGTAAGAAGAATGATAAAGGTTTCATCACTATGCATTACACGGACAGCACGACTTAGGCCACAAATGAGTCAGGTACTTAGCCTTCTGAAAGGGGAAGAGGAGGTTCAGACATGGCTAAACTCAAAATCGATCATGGAATGCCAAGATGAAGAAGCGTATCCTAGCTCAAGCATCGGATCGCATTTGGAATTGGCATTGCTTGATGTAGAAGAAGATGATGCTTCTGAAATTAGCTTCGAACAGAACCAACTTAACTCTTTGGATGATTACCTGAGAGAAAGATGGAGCAGATCTTCCAGTTTCGATTAG

Protein

Gene

>AfisC5G05163
CTTCTTCTGGGCTCCATTTTTATTCTCTCTTTCGTTGGACCCCATTTTTTTTCAATTTTTCCCTTATTTTTGCCTGCTTTTCATGCTCCAATTTATACGCCCATTCATCATCAAATACCAAACCATTTCCTTTCCATTTTACAATTGCGTTACTTTACTAATTTCTCTTCTTCTAGTTTTTGAATTTGAGTTGGAGTAGTTGGTTCATGCTTACATCTGGCGGCCATTTATTTATAACTGTTTATTTTTAAATAAGACAAGTTAATAATCATTGTATCTGTTACATTTTGTTAATACAAGTTTGAAAGTTCCTCGTTCACTGCTTTTGTTCTCTTTGAACACTAAGTTGTTTTATATAGTTACCGAGTTCTTTTGCGTAGAACTCGTACTATTTGATCTTTGAATTTTCGTTTGGGCGTAGAACTCGTATTGTTTGATCTTTGAATTTTCGTTTGGGAGAAAAATATGACGGTCGAGAAAGAAAACAAAGTTGAAGAAGGAATCAACAGTTGTGTGTTAGTCGGAATTCAAATTGACGAAAATGGAAAAGAGTTACTAAATTATGCTCTGAATAATGCAATTGAAGAAGGAGATAGAGTTGTTGCTCTTTATATTTCGCGCAGTTCAGGTAATTTAATCTCCACAAAATTTACATTTTTCTTACTATAATCATGATCATTTTTTGATTTCTTATTGCTGAATTTACTTTCAGATCTTGGTACGAGCACTCAAACCTCAATTAAAGCACTAAACAACTTTTTAGTAGAGTATGAAGAACTCTGTAGGTCGAAAAAGGTTAGCATTTGTGTACTTTCTTTCTTTCTCAAAATTATACGATTTGCTGTTTAATCTCTGTGATTTTAATGGAGTTTAGGTTACTCTTACCGGTCGCGTTGCTCGAGGAATTTCTATAAGAAGAACAATAGTTAAAGAGGCAGCACAATGTAACGCGAAAAAAGTTATTGTAGGAAGAAACACAAATATTGCTCTTGGGTAATTCATTTATTTACCTTCTTAATGATTATTTTACCTAAGAATTATCAGAAAATATTCCAGTAATTTATGTGAGTTATATTGACATCCTTTCAGATGCTCTGCGTCAGTGGCCAAATATTGTTTGAAAAAATTACCCCCTACCACTACTTTAATTGCCTTCCATAATGGAGAAGTTTTTCTTCAGAGATTGTCCCAAAAGCCTTCTCATCAAGGTATTCTTTTATTATTATTATTAATATTTTATTTCTCTTTTTTTTTGTTTGAACCTGAAAATTTGAAATTCTCCTACTTTTGATCTCTTATTTTTGAGTTTGACTATTACATATGAATTAATAATCTGTTACTGATATTGCCAAAGAATATGTTTTTGATTAATTTTTGATTTTTGCAAAATAGCCGAAACTCCAAAGCAGAACCTTGGAAGTATACTGCATCCCAACATTGGCTTATCCACCGAAGACAACGAAGAATATGAAAATGATAGGTGTCTTATTGTAGTAAGAAAACAACCTGAAATAAAACCTGGTTGGCCATTACTAAGGAAAGCAATAAATGCAAACATGGAAACGTCAAAAGAAACCGAAGCTCGTAAAATGTCAGTGGTTCAATGGGTCATGAATTTACCCGATCGATCATCGTTGTCTGTTAAATCCCCCACTTCAGATTTAATTAACGAGTTGGAAACCATTCTCAGTAAAAATTCCTCCACTTGCAAATGGTTTCAGTATGAGGAGTTACAGCTTGCTACCAACTATTTTTCAAAAGGTCCTTTTTCCACCAATTTCAATTTTGACATGTTTCTTTAAATCTTTTGTTGTTGTTATAACTGTTTTTGTGATATTTTGAACAGATTATTTGATTGGAGAAGGCGGTAGTAGTCGAGTTTACAAAGGATGTCTTGCTAATGGAGATAAAATAGCTATCAAGCTATCAAAGTTATCGAATGAAACATCCAAAGATTTTCTTTTGGAAGCTGATATAATTACTAAATTGCAACATGAACGTATCGTTCCTTTGTTGGGAATTTGTGTTGAATGCAATACGTTTCTTTCGATTTATGGTTATTTCTCCAAAGGAAGTTTAGAAGAAAATCTACATGGTAAGATTTAAATTTATTTGTTTCATTATATCACAAATATCTGAAAATTTCAAGGCTAAATATATTTGTTTAATTTGGAAAAATTACAGGAAATAAAGTAAAAACTCCATTAGCCTGGGATAAAAGATTTAAAATAGCAGTTGGTGTAGCCGAAGCATTGAATTATTTGCATACAGGTTCATCTGAATCAGTTGTGCATAGAGATGTTAAATCTTCAAATATTCTTCTTAATGACAAATTTGAACCTCAGGTAGCAATACATTCAGTTCAGTTACCAGTTTTGTTTTTGAAATTACCTCATACGTATTGAACGAGGAACTTTACATGTGTAGTTGTCTGATTTTGGACTAGCTGTGTGGGCACCGAAGAATCCATCGTCTCAGACTCAAAGTGACATTGTAGGGACATTTGGGTATGTCATTTTGTTAATTTTATCTCTATATTAGTGTCGGTTGCTATTTAATTGACAATGTATGTTTGAATTTCGATAGATATCTTGCACCTGAATATTTCATGTATGGTAAAGTTAGCAGTAAGATCGACGTCTATGCATATGGTGTTGTTTTGCTTGAATTATTGACTGGTAGAAAACCAATTTCTGACGACAGTCCTAAAGGCCAAGAGAGCTTAGTTATGTGGGTAAGATATATCTTTCAATGCTAGTTATATTTATTTCTTGGTATTTTAAGTGCGAATAGCTTTAATTTTGTGTATGTTGTTAATGGTATAGGCCATACCAAGACTAGAGAAAGGAGATCTGAACGAATTTTTGGATCCAAACATTAACGGAAATTTCGAAGAGAAGCAAGTAAGAAGAATGATAAAGGTTTCATCACTATGCATTACACGGACAGCACGACTTAGGCCACAAATGAGTCAGGTACTTAGCCTTCTGAAAGGGGAAGAGGAGGTTCAGACATGGCTAAACTCAAAATCGATCATGGAATGCCAAGATGAAGAAGCGTATCCTAGCTCAAGCATCGGATCGCATTTGGAATTGGCATTGCTTGATGTAGAAGAAGATGATGCTTCTGAAATTAGCTTCGAACAGAACCAACTTAACTCTTTGGATGATTACCTGAGAGAAAGATGGAGCAGATCTTCCAGTTTCGATTAGCTGCATTTACAGTGTGCAAATGAATTGTGTGTATGTACATATAATGCGCACAATTCATGTTTTTTTTTTTTTAACTTTTCTTTTCCTTTTGAATGAATATTGAATTTTGAACTGAGTTGATGCCACCTAGGGAGAGGCAGTGCATATTGCGTGGAACAAGAAAAATGAATAAAAATTGAAGTGATATAGGTCGTTGTAATTTGTATATTAGTATCAAAGGTGAGAATATTAGATAGTTGGAAGTAAAAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262919.1	2.5e-242	receptor-like cytosolic serine/threonine-protein kinase RBK1
Swissprot	Q5XF57.1	9.7e-66	Probable receptor-like serine/threonine-protein kinase At5g57670
trEMBL	A0A5P1E346	7.9e-222	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G16750.1	43.67	2e-130	462		Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05163	AT2G16750.1	600	297	14	17	597	14	591	43.67	2e-130	462
AfisC5G05163	AT5G63940.1	691	342	13	14	625	19	703	38.21	3e-125	446
AfisC5G05163	AT1G77280.1	470	190	8	194	625	331	794	50.21	6e-122	434

Ortholog group

Species	Genes
Allium cepa	g333040.t1
Allium fistulosum	AfisC5G05163
Allium sativum	Asa4G04995.1; Asa5G02247.1; Asa6G03179.1; Asa6G05218.1; Asa7G00717.1; Asa7G07608.1; Asa8G02074.1
Arabidopsis thaliana	AT2G16750.1; AT4G35030.1; AT4G35030.2; AT4G35030.3
Oryza sativa	LOC_Os03g13820.1; LOC_Os03g13820.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00582.23	Usp	Domain	17	136	24.1	3.8e-05
PF00069.22	Pkinase	Domain	284	549	146.1	1.1e-42

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0006979	P	response to oxidative stress
GO:0009506	C	plasmodesma
GO:0009623	P	response to parasitic fungus
GO:0009814	P	defense response, incompatible interaction
GO:0009860	P	pollen tube growth
GO:0010068	P	protoderm histogenesis
GO:0012505	C	endomembrane system
GO:0019901	F	protein kinase binding
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048367	P	shoot system development
GO:0048768	P	root hair cell tip growth
GO:0051020	F	GTPase binding
GO:0071369	P	cellular response to ethylene stimulus
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network