result

Gene information

Detail information of AfisC5G05231

Location

Gene	Chr	Start	End	Strand
AfisC5G05231	chr5	959787065	959789230	-

Sequences

CDS

Protein

Gene

>AfisC5G05231
CTCATCAATATATCCGCACAATTTTTAGTTTCGTTTTTATTTTGGGAAAAAAGAAACAAGATATAGTAACACTTCACCCAATAGGACAAACACCCTTAATTTTATAATTTCCAAAAAGCCCCCTCCTTATCTATAAAACTGACTTCCAGTGTTGGAAGAAGAAACCTTTCAGTTTTTAGTAAAAACATTTGAAATGAGCGGAAGCAGTGGAACAGGAGGAGGAAGTGGAGGAGGAGGTGGCGGGCCATGTGGAGCCTGCAAGTTTTTAAGAAGGAAATGTGTGACCGGCTGCATATTTGCTCCTTACTTCGATTCTGAGCAAGGCGCCACTCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCCAGCAATGTTTCAAAGCTCTTGTTGCATATTCCGGCGCATAAAAGACTCGATGCTGTTGTTACTATTTGTTATGAAGCACAGGCGAGGTTGCGTGATCCTGTCTATGGCTGTGTCGCTCATATCTTTGCTTTACAACAACAGGTTCGTTTGAATTTGATTTACTTTGAATTTGTTAAAGTGATGGTGGAATTAGTATAAGTATTAATTGGTAATAGCTTTTTTGATATAGTTTACTTGTGGATTTTGATTTTTTTTTCCTTCGAATCTCTCTTTTGTGTAATTTGAACATGATTAATTGATTTGTGATGATTTTTCTGCTTTTGCTTAATTTGTTAAGGTGGTGATATGATATATGCTACCTTTTTTATTTTTTCATTTTTATGATCTTTGAATAATGAACTATTGAAACATAAATATGATTATTTTGAATCGTGAATAATTAGGCTTCATTTTGGAAATCGAATTCGATCGATTTGGTTCATATAGGGTACTGTAATCTTCATTTTATTTCCATATGCAAAATTCTATGTACCATAAAAGTGAAATTTTTCAATGAGTTTATTTCCTTATGCAAAATTTGTTACCGAATTTAGAATGCTTTTTTTATTTTATTTTTCCTTCTGCATCCTTTGGTATGTATCTCCATTTTAATAGTCAATGTAAAGAGAATTGATTGACATCTTTAAACCTATCGCTCTATCTAGCTATGTCAGTCAAAATTCATGCATAAACTATGAATTACAATTTGGGCACCAGATCAAGAAAGATACGACGTTTGGTCAATACACAATTTTACCTTTCCAATAAATGGTAAACTTTGAAACTACTATATAGTCTGTATGAACATCTGAGAGGTACAGAATAATAACTAGGGTTTGTGATATTAGTTTATACACTACAACTAGTTTGTTATTCCATCACAATTAAAGTTAGTTGTTGTCATGTTGCAACTTGTTTCTTCCAAAAATCGCAGATCTAATCTTGAATTTGGAATGAGTCGTTTTCTGTAACTGATGCCAAAAGAAGAAGAAGAGACTCACAAGTAAAGCAATCAATTTTCTCCCACATTTTTTTATCAAAGAAGTACATTTAGGGCACACGCTAACAAATACCGCCTTTTCTTAATTACATAAGCTCACATCCACATAATTCATTTTATTATTTCCCCAGTATGAACAAATTTGTTCCAACGTTTCATTTAACCAATGTCAAACCAATATTTATTCAAAAAACTTGGAATATTGTTTTTGTTTCTAATACACAATTTACTTGTACATCTAAATTATTCACAGGTGGTAGGTTTACAGGCAGAACTTTCTTACTTACAAGCTCACTTAACACAACTCGAGCTTCCATCACCTCCGCCACCACCACCAATTCCCACTGTAACCTCTGCACCATTTTCAATCTCGGACTTACCATCATCTTCCCACTTGCCATCGAACCTTGACCTTTCAGCATTATTCGATCCAATGGTCCAACCGACATGGAACATTCATCAACAAGGTACCCAACAACAAATGATTGAAAGAAGAAATAGAGAGAACATCGAGGAAAGCTCAAGTACCATTGCTGGTGGTGATTTGCAAGCTCTTGCTAGGGAACTTCTTGATAGACATCAATCGAATGCACGGACTGCTGATTCTCCTCCGACTTCCAAATAAATTTATATATAATCAATTAAATTAGTGTCATGACTCCGTTAATTGAATGTTTATGGATGGTGGTTTGTTGTTTATTAACTTTCTTTGCTTGTATGGATGTATTAACATTAATGTATGAATGTATATGTAAGAGTAGGG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009400358.1	1.7e-68	PREDICTED: LOB domain-containing protein 18-like
Swissprot	O22131.2	7.6e-53	ASYMMETRIC LEAVES 2-like protein 20
trEMBL	A0A804J377	1.3e-68	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00220.1	63.40	5e-58	220	JLO;LBD30	Lateral organ boundaries (LOB) domain family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05231	AT4G00220.1	194	62	3	19	210	18	204	63.40	5e-58	220
AfisC5G05231	AT2G45420.1	213	63	4	18	215	37	246	61.97	2e-57	218
AfisC5G05231	AT4G00210.1	222	86	6	10	218	3	213	50.45	3e-48	188

Ortholog group

Species	Genes
Allium cepa	g533302.t1
Allium fistulosum	AfisC5G05231
Allium sativum	Asa6G05277.1
Arabidopsis thaliana	AT2G45420.1
Oryza sativa	LOC_Os03g14270.1; LOC_Os10g07510.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	18	116	133.1	3.3e-39

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005654	C	nucleoplasm
GO:0009799	P	specification of symmetry
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0009965	P	leaf morphogenesis
GO:0010089	P	xylem development
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010311	P	lateral root formation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048441	P	petal development
GO:1900150	P	regulation of defense response to fungus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K21994	LBD18; LOB domain-containing protein 18	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network