result

Gene information

Detail information of AfisC5G05245

Location

Gene	Chr	Start	End	Strand
AfisC5G05245	chr5	963517966	963520103	-

Sequences

CDS

Protein

Gene

>AfisC5G05245
ATGTCAAGCTTCTCTCTACCGGTTTGTGAGACTATTTTGCCTGATGTTCTATATATATTCTTTTATCTCTTTGCTCTATAGTTTAGTCTTGTGCCTATATTACTCACATTCCAGTCTTGTTTAATTTAGCCGTATACATTACAGTTCGATACAATCCAAATGTTGCTCACATTCCAACCACTACAACAAAAGTTTATTTTCTTAGCGCCGTTAGAACATAAATTAGCACAATTGGTAGGTCGCATTGATGCTCAGTGCTTGCATAGATGGAAGAAGGTTTTAAATCCTGAACTAGTTAAAGGAGCTTGGTCTAAAGAGGTATATAGATTTTCCCATATTTTAATATGATTTTGCATGAAAGAATAGGCATATTAATTAAAATAAGACTGCATGATGTACATTGATAATATGTTACGTTTCTTTGTTATAATGAGTTTTGTTTCATTTACTGTTCAGGAAGACGAAGCTCTTGTTGCAATGGTAAATAAATTTGGACCAGAGAAGTGGCCAAAAATTGCAAAACATTTGCACGGACGCATTGGGAAACAATGTCGTGAGAGGTAGCACCATTCATCTAAACTTAACGTTGTTTGCTAAGCTTGTTTTTTTACTTGTTACTGATACATACTGATTTTCAATTCTTACTACTGCATACAAATGCCTCCTTAGCTATAAGTAATCATCTTTTATAATGTTGAGTTCCTTTTGAGCTACCACTACGTGATATTGTCCCGCATGTCAAGGAATTAATATGATGAAAACCAGGTATAACTATAAGGACTATTGGTTAGATTCTAAATTTAATCATCACTCGATATTATTGGGAATATCTTTTGGTTTCAAGTAAAGAATAAATGAAATTATATGATATTTAAGTATCTCCTCCCCAAATCCAATTTTCCTGAAACACACAATCCATTAATCTCAGTTTTCCTTTGTTTATTCATGATGGTAATGATGATAAAGATGTGTGTATGCCCGCGCGTGCATGCGAGTATGTGTGTGCCTATGCATGCACATTGAGTTATATTTATGTTTTATTTTGATCCTAACAATATCTAGTGCAAGGATGTAAATATTGTAGTATACATTCTAAACTGTAGACAGTTGTTAAAAACAGGAGTTTGTACTAGTTCTGCAAAAATCTATTTGTATTTTCAAAACCTGCTTTCAGTTTAGAAGGCCAATTTAGAAAAACTGATTAGAGAAGCCATATCAAACATGCCTTTTCATTTGGAAAAAAGGAAAAATGAAGGATTTTTTTTGTTTTGTTTGTTAAATATAAACTGTAAAGAAAATTTAACTACTAGTATTATGGTTCAAGCTTCCAGCCGGAATTCCAGAATCCCGGAGATTTTGTCCCGGTTCCAGCGTGGACCGGACCGTGATGCATTATATTTTTGGCCAGATCGTCGTTTGTGGAATTGAAGGAGAAGCAGCAGCGTTTGGGGCTTTGGGTGCTTTAGTCTAAGTTTTAAATTAGGCTGAGAATAATAAAATAAATTTACATGGCTATATAAATTTGATTAATGATTTGGATTAATAATTAAATTATAATTAGGTTAATAATTTTAGTTTAAGTTCATTTTAATAAATTTATTTTACATAATTTGTATAAATTTTGTCTAGTATTAATATTGTATATTTGTTAGCGTACGTAGAAAAATTGTACTAGAATTTAGAAACCCGAATCAAAGGGGAATTTTCGAAATGGGACCGAAAATTTGGAATTTTCCACTGACCTGAATGGAAACTAAAGATGGAATTTCAAACCTTGACTAGTATAATTGCATATTGAGTCTATCTGTAACATAGGTTTTTATATATGCTTGGTTCTATTTACAGAGCTGTTATTCTTTTATTTACAAAATTTGCACTGTATTTTAATTATTAAAGAAATCAGTAAAGAAAATTTAACCACTCTGAAGATTTGAACAAATTGATGTACTTCTTAAATTACTCTACTTCACTTGTAAATGCTACTTGATTTTATGGCATGTTGTATACTTTGTATTAGTCAATCGCCTAATGAAATAGTGTGATGAATATTTAGTGTTTGCATTATGAATCCGATTTAACTTTGTGTACACTTTTTTTGATGAATTGATTCTCAAGCATTACTTTTGCTTTACAGGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	GER33791.1	4.6e-21	myb-related protein
Swissprot	Q9S7G7.1	2.0e-21	Plant c-MYB-like protein 1
trEMBL	A0A5A7PMF6	3.3e-21	Myb-related protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32730.1	70.49	8e-24	105	ATMYB3R-1;ATMYB3R1;MYB3R-1;MYB3R1;PC-MYB1	Homeodomain-like protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05245	AT4G32730.2	61	18	0	40	100	68	128	70.49	6e-24	105
AfisC5G05245	AT4G32730.2	57	32	1	36	92	116	171	42.11	7e-07	48.9
AfisC5G05245	AT4G32730.1	61	18	0	40	100	68	128	70.49	8e-24	105

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	59	100	51.0	1e-13

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003713	F	transcription coactivator activity
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0016363	C	nuclear matrix
GO:0031523	C	Myb complex
GO:0032465	P	regulation of cytokinesis
GO:0032875	P	regulation of DNA endoreduplication
GO:0042025	C	host cell nucleus
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0090307	P	mitotic spindle assembly

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network