result

Gene information

Detail information of AfisC5G05258

Location

Gene	Chr	Start	End	Strand
AfisC5G05258	chr5	965337306	965339807	+

Sequences

CDS

Protein

Gene

>AfisC5G05258
CCCACTTTCCCAAATTCTTAAACAGACTTGCCGCACATTTAACATTCCCAAATTCTGAAAATCCTTTTCTCTTCCATAACCAAACCCTAAATCTCTACTTTCCTTCGCCGAAATTGCATAATAGGTTGCATATTCTCCCTCTACTTCCCGCTAGACCAGACCAACCTACCAACTTTGCCAACGTCCACCACGTCTTCGGCGCCAGCAACGTCTCCAAGATCCTCCATGATCTTTTTGCTTCCCAAAGCGAGGATGCCATCAACTCCCTCGCCTACGAGGCCGAGGCCCGAATCTGCGACCCGGTCCATGGCTGCGTGGCCTCCTTCTGCAACCTCCAGACCCGCATCAAGCAAACTTGATGAGTGAGCTTGAATTATTACTTCGTATTGTTTGTCTGCCTTCAAGTATCGATAAACTTTATTTGTTTGTTCAATTTGATGATTAAGCTTAAATTTATGTGATTAAATCCTTAAACTGTTGGTAATTTGGTTAGAGTGAAATCTTTAGAACATTACTTTACGGTTAGCATTTCAAAATGAAATTGGAAGAAATAATATATTTGAGTCCTACTATCTAAGTTGTCTGTGAAATGCCTATCCATGCTAACTATTACTGAAGTAAACCAATAATTTACTAAATATGTTAGTAATGACAGATTATTTTACCAATCAACCCATAAGCTAATCCAGCTCGCATTAAAAAAATGAAATTAAACAAACTAGAATTGAGAAAGGTTAGGTTATACATAAATTACTTACTAAAACTGTTCTTCCAAATCTTTTTTTCCAAATCAAAGCTGATTATGATGCTCATACTGATATTCCTGTGATGTAATAACAATGAAAAAAATGACAGTACTTTAGAAATATAAGTTGGCTTTTTGGTGCTGTAAAATAGAAGAAAATAAGTTAGAATTTTGTTTACTGATGTTCTTAAAATTGATATAGTCTACGTAGAAATCAGCGACACTTTGTGATTTGATTTGAGGCCAATGAAGACAAACGAGCTATATTAATTTGCAATGCACATATTCAATTTGACAAAAAGAAAACTAATTAACAGTTGCATTTGAAAAAAATTGCTTATACTTTCAGGTTATAACAAGGAACAATTATTTTCAGGCCATGCAATCCATATCAGTTAAAGAAGTAAACAGTGTTGTAATTTAGTATTGCTAATGGCCACTTACATTTCAAATATTCAAAATTATTCTCACCAATGAGAAGTGAAACACATTTCTTTTATTTGCTTATTGCCCATGAACAAGTTGTTTGCCAATATTTTGTGTTTTGGATAAAAAGCAGGTTTCAGTTTTATTGGTATTTAGTTCTCTATTTTTGAACTGCCTACAGGATAATCAATCCAGACATATGGAAATGGTATAACTTTTGGCTAGAATGTCTTCACTTGTTAGTTTCATTAAAACTTTGTCTATAAATTTATATTATTTTACCTCAATTTATGTTTTTATTCCACTTCCAAAACTATTCTAGCTCCTTGTAACGTTCTCTGCGTGCAAATTTTGTTGTATGTCTAAGTATGCTTTTTTCTCCATAGTATTTATCGCTGAAATATCATCAAAGTAACCGAGTATGAGTTCCACATAACTCATAGTTCAGTCTAATTTTCTTCTGAAATATCAAATGTATTATCGTTCATCTATATAGTAGTGTAACTGACATCAAATTTTATTTAATGAAATATAATCAAATTTTCTTCTGAAATATCAACAGCTAGCATCCAGCTGAGAATTTTTTTCCTTCAATTTGTAGAGTATCTTTAGTGGTAAAAGTGTGTTCACTTAACTTTGAACCTTTCACGCACACACACACATAAGTATACGTATATGTATAAGTGTGTGTGTATTAGACCAAATTATATGTTTAATGTTTGTGAACAATGGCAATACTTCAAACTGCACTGCTATTTTTCTTCGGCATACGCTTGTAAATCCTTTTAAAGTTGAAAATGTTTCCGTTGCATGATACAAAACTTATATTAGTGTCCTACTATTACCTTGGCCTGGAGCAAGAGTACCCTTTTGATGTGTAGCTGTAGACAATCATATCCAAGAGGTATGAAATATATATTTGTGTATGCTAAAAAGAAAACTTAAGTTATTTTTATTGGGTTAGCGAACAAAACATACATTTGAGGCATTTTCAGTTGTAATTTATTATAGCCATGGTGAAAGGCATGAAAAAGAGTGCTAATATGTCTTTTGCATATAGAAATGACGTTGTATCACATGCCAACTTTCTATCTTTTTGCGTGCATGATATGTCTGAATAAAAATGTTTTTTTGTTGTCTTATCGATAAATCTTAAATCAGTTTAATGCTTTCAGTTTATTATTGCAAGTAGTAATTTCACTTTTATTATACAGCTTCCCTCATCTTCTCAACGTTCAAAATGTCATTGTGTTGGCAACGAAGATGACGTTCGTGAGCTACAGAAAACTATTGAGGAAATGTGCTTAGAGCTCAAGAATGAGAGAGCAGAG

Functional annotation

Database	accession number	e-value	annotation
nr	CAB4094902.1	2.1e-17	unnamed protein product
Swissprot	Q8L8Q3.3	9.2e-18	ASYMMETRIC LEAVES 2-like protein 3
trEMBL	A0A0K9QYP5	2.6e-17	LOB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G27650.1	64.06	5e-20	92.4	LBD25	LOB domain-containing protein 25

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05258	AT3G27650.1	64	23	52	115	62	125	64.06	5e-20	92.4
AfisC5G05258	AT5G66870.1	67	25	52	118	30	96	62.69	1e-18	87.8
AfisC5G05258	AT5G63090.4	64	26	52	115	34	97	59.38	3e-18	86.7

Ortholog group

Species	Genes
Allium cepa	g428279.t1
Allium fistulosum	AfisC5G05258
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	46	117	75.4	3.3e-21

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005739	C	mitochondrion
GO:0005654	C	nucleoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009536	C	plastid
GO:0009799	P	specification of symmetry
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0009965	P	leaf morphogenesis
GO:0010089	P	xylem development
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0048441	P	petal development
GO:1900150	P	regulation of defense response to fungus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network