result

Gene information

Detail information of AfisC5G05306

Location

Gene	Chr	Start	End	Strand
AfisC5G05306	chr5	980121189	980122859	-

Sequences

CDS

>AfisC5G05306
ATGGGAAGATCGCCTTGTTGCGATGAAATTGGAGTGAAGAAAGGTCCATGGACTCCGGAAGAAGACAAGTTGTTGATTGATTACATTCAAGAACATGGTCATGGAAGTTGGAGAAACTTACCTAAGAGCGCAGGCTTGAATAGGTGTGGAAAAAGCTGTAGATTGAGGTGGACTAACTATCTTAGGCCTGATATCAAGAGAGGCAAGTTTACTGAAGATGAAGAAAGACTTATCATTCATCTTCACTCTGTTCTCGGTAACAAATGGTCCTCAATAGCAACGCGTCTAGAAGGAAGAACAGACAACGAAATCAAGAACTACTGGAACACTCACCTGAAAAAGAAGCTCCTTTTAATGGGCATCGACCCAGTGACCCATCGGCGTAGGACTGACCTAGACATTCTTTCCAACTTACCTTCACTCCTCGCTGCAGCTACCAATCTTGGAAACTTATCTATAAGTCCGAACACTTGGGAAAATCTCAATGCACTTAGACTCCAAGCAGATGCAACACACTTGGCCAAGGTTCAAATCATGCAAAGCATGATCCAACTCATAGCTTCGAGCTCTAACCCTTCTCCTACATTGGAAGCAATCGGTCTATTGGGCTCATCCCTTTCTCTTAATAATAACAGTGGAAACAACAGTACCCAATTTGTAGGTGATGTTATTCAAATGAATAGGCAAATCGAGGCGGTGCTTAACGGTTCTTTGAGCCTTGGTACCCAGAGTTTGGACAGTTCTTTGATGTTCAGTGGTTTACAAAGTCAAGAGAATGATGTGAATCAGATGATGAATAACAATCCTTTGTATGATAGCGTTTCCGGTGAGAATTCTAATGTGCCTGCTTTGGTAAGCGCTTCTCCAGAACATGTTAGCACGTGCCATGGAATGGGCGATAATAAAGTAGTGTGCCAGAACGATGTGTCTGGTAATTCTTCGAATTCTAAACAGTTTGATGCTTGGGAAAATATCAACACTGAGGAGGACTATGGGTGGAATGATATCTTCGACCAGGTGTCTTTTACTGGATGA

Protein

Gene

>AfisC5G05306
CTTTTTCATAACTAATAACAACATTTCAAACTATATCATCATATAATCTTAAGCATGGGAAGATCGCCTTGTTGCGATGAAATTGGAGTGAAGAAAGGTCCATGGACTCCGGAAGAAGACAAGTTGTTGATTGATTACATTCAAGAACATGGTCATGGAAGTTGGAGAAACTTACCTAAGAGCGCAGGCTTGAATAGGTGTGGAAAAAGCTGTAGATTGAGGTGGACTAACTATCTTAGGCCTGATATCAAGAGAGGCAAGTTTACTGAAGATGAAGAAAGACTTATCATTCATCTTCACTCTGTTCTCGGTAACAAGTAAGTTGTTAATTATATCTAGTTTCCATACCTTATTTTCTTCAATATAATTATGATATACTACATAAAAGTTGTGATGTTGTTTTCACGTTGAATTATGTACTTAATGCATCTCAGCAATAAATAGTTAATCATGTCTCATTTAATGATAGTTTTAGAAAAGGACCTGCATATTTTCAATGTTTTAAGCAAATATAAAGAGTCTCATAGCATTTCTTGCTTTGACCTTATAACAGATGGTCCTCAATAGCAACGCGTCTAGAAGGAAGAACAGACAACGAAATCAAGAACTACTGGAACACTCACCTGAAAAAGAAGCTCCTTTTAATGGGCATCGACCCAGTGACCCATCGGCGTAGGACTGACCTAGACATTCTTTCCAACTTACCTTCACTCCTCGCTGCAGCTACCAATCTTGGAAACTTATCTATAAGTCCGAACACTTGGGAAAATCTCAATGCACTTAGACTCCAAGCAGATGCAACACACTTGGCCAAGGTTCAAATCATGCAAAGCATGATCCAACTCATAGCTTCGAGCTCTAACCCTTCTCCTACATTGGAAGCAATCGGTCTATTGGGCTCATCCCTTTCTCTTAATAATAACAGTGGAAACAACAGTACCCAATTTGTAGGTGATGTTATTCAAATGAATAGGCAAATCGAGGCGGTGCTTAACGGTTCTTTGAGCCTTGGTACCCAGAGTTTGGACAGTTCTTTGATGTTCAGTGGTTTACAAAGTCAAGAGAATGATGTGAATCAGATGATGAATAACAATCCTTTGTATGATAGCGTTTCCGGTGAGAATTCTAATGTGCCTGCTTTGGTAAGCGCTTCTCCAGAACATGTTAGCACGTGCCATGGAATGGGCGATAATAAAGTAGTGTGCCAGAACGATGTGTCTGGTAATTCTTCGAATTCTAAACAGTTTGATGCTTGGGAAAATATCAACACTGAGGAGGACTATGGGTGGAATGATATCTTCGAGTAAGTTTTCTTAACTTTTAGCAAAAATTATCTATAATAGTAGGTTTAATCACAATTGTTCTGGTTTGACATCTTAGTGTATTGGCCATTATTTTTAATAATATGTCTTAAAATGTGTGAATTTGCAGCCAGGTGTCTTTTACTGGATGAGAAACTGGATAGCAAGAAGAGATGAAGATGGACTAAATAATGCACAGATTTTAGTTATGTTTCTGTTTGTGAATTGAGTATTTTGGTATACATGCAGTTTGAAGTTTATGATTCAGTGGCTATGATCAGCAGCCAAAAGAAAACATTATGTATTATAATGTACAAAAAGAAAACTATCTAGTCTGTATAGTTCGTGATATGTTAGATGGCATTACTAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260795.1	4.4e-116	protein ODORANT1-like
Swissprot	Q9S9Z2.1	2.0e-68	Myb-related protein 93
trEMBL	A0A5P1F064	3.2e-116	Transcription factor MYB39

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16770.1	47.58	3e-76	282	AtMYB9;MYB9	myb domain protein 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05306	AT5G16770.2	351	132	10	1	338	1	312	47.58	3e-76	282
AfisC5G05306	AT5G16770.1	351	132	10	1	338	1	312	47.58	3e-76	282
AfisC5G05306	AT1G34670.1	215	56	4	1	215	1	188	61.40	9e-71	263

Ortholog group

Species	Genes
Allium cepa	g433646.t1
Allium fistulosum	AfisC5G05306
Allium sativum	Asa6G05393.1
Arabidopsis thaliana	AT5G16770.1; AT5G16770.2
Oryza sativa	LOC_Os06g02250.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	63.9	9.6e-18
PF00249.28	Myb_DNA-binding	Domain	67	112	56.2	2.5e-15

Gene Ontology

Accession	Ontology	Name
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network