result

Gene information

Detail information of AfisC5G05329

Location

Gene	Chr	Start	End	Strand
AfisC5G05329	chr5	985533272	985536629	+

Sequences

CDS

Protein

Gene

>AfisC5G05329
TATCATATTTCACATCACCAAAACCTACTGCACTGTCTATAAGTACAACCAAATAGAAGAATAATTAAGCATCAAACTAGAAGAAAGTAAGAAAAAGAAGAAGAAGGAGAAGAAACAAGATGGAGCTTTTCCCAGCCCAACCAGATCTTTCTCTTCAAATCAGTCCACCAAATCCAAACACCAAGCTACCAACCAATTCAAGTAGCTGTAGTAGTAAAAGTAGTGATGATGCCATGAATAATCTAGGGTTTAATTGGAGCGCTTATGGTAACAGCAAAATTCTTCATGATAGCTACTCCAAAAACAATAATATCATTGACCTCTCTTTAGCAAAACCAACCACCACCACCACTACTGCTTCAAATTACCAGCACAATCTTTACAATTTTCGTCACAATCATCATCAAGATCTAAGCTCTTTAAGACCAATTAGAGGCATTCCTATATATAATCATGCTCCTAACACATCATTCCCATTTACACATCCTTCTGCTTCAAGTAATATGGCTATGGCACGATCGAGATTTTTGTCAAGATTTCCGACAAAAAGAAGTATGAGAGCTCCAAGAATGAGATGGTCTACTACACTTCATGCTAGGTTCGTTCATGCTGTGGAGCTTTTGGGTGGCCATGAGAGTAAGTGGTGTATTTGGTAATTTTGGTTTTAGTTTATGTTACTAGATTTTTTTTATTTGGTTAATGAAAATTGTAGGGGCTACACCCAAGTCTGTTCTCGAGCTTATGGATGTTAAAGATCTAACTTTGGCTCATGTAAAATCTCATTTGCAGGTATTAGTTTCTGATAATTACTTTTCTTTTTTTTAAATAAATTTTTACCAATGATATATTTCATGAAGTATGACAATAAATTTACAAAAACGAATCATGAAACTTCATCTTTGAAAGCAAACAAATTCCCGCTTGTTCCTTCTTGCGCTTCTTAATCCTTTGTGATACATGTGAATGATATCGACACAAACTAATAATTAAAGAAATAAGAAATTATCATGATGTAATAACGATTGAAATAACATATGAAGTACAACGTACCATCATAGCTTTATTATTTTTTCTTGTTGCATTCAAGAATTTAAAAGGCTGTAGTAAACAGTCTTTCAAAAGCTTTGTCTTGGAACCTTGATTTATTTTTTTCTTTGTTCCTTCTGGTAATTATAATGAAATTGTGAAGAAGAAAACATATTAAATAGTTCAGATTGAAATATGTGACAAATTGCAGATGTATAGGACAGTGAAGACCACTGATACTGGCACAATTTCAGGTATATCTAGAAGCATTCTAAACTTCTTAGTAAAAGTTATTAAGTGATGCCAATAAACTAAACACGTTTCACTCTTTTTTACGAGTTTAGACCAAAATGAGTCTTTAGAAATATCATCAGACGACAATTTGAATGACATCCGTGGACCCGGAATTCAAGAAGGGAAGTCTTCAGCACAAAGTGGTAACAATCGCTATGGTTTATGGAGCAATTCCTCTAGGTAAGTTTGTTTATTTTTATTTTTTTTAATTACATTATTTCGATTATTTTGCAGTGTTTTCTTGTCCTGGACAACAGTCACAAATTTGCATGGTTAATTATTGGTACTGCATATTTATTCAATTATGTAGATCAACAGAGTCACACAATGAGAAAAGGATCTAAGTTAACGAAAGTGTTTTTTGATACATGTTAAAAATGGAAATACACTTTAATTAAAATGCATCATAGGTATCATTAATCGAATAGAATACATGTATACCTTAGGATTTCCCACCAATGTGACATACAAGATAAATGCATATCATATACTTTATTGTGTTTGTGGTTTTGTAGAATCTAAAAGGAGATTGATAAATACTGACCCTTCTATTTACACACTTAAATACCTTCATCTTTTGCAAAAAAATTCCAAATCAAAAGGAGAGTAAAAGTGGTAAGACATAGAGAAATGGGAATGTGTGTTTATCTCTGCCTTTATAAAAACAAATGTCAATATTCTTAACAAGCATATTCTTGACCATTAACGTTGTTTCTCTAGCCAAATTTGAAATGATGACCAAGATCAACTTTGATTATTTATTTAATTAACCTGGATTTTATTATTTGTTTATTTTGAAGCGAACCTTGAACCGTTATAAACTAAAACACATTTATCATAATACCATACAGCCAGCATAAAATATCCCTAATATGAATATCTATCATGCACAAGCCATAAGTTTAGTCTAATAAAGTATTTCAAAATGTTACTTTACTACACACTTTAAACTCTCGCTAAGGAAGTGCTTGCATAAAGCACTAATAGATTGAGATCGCATACATATAAGTTCCATTTGTCAATAATCATGAGGACAAAATGAACCTCAATGAATGATAGTGCAATGATTTCTTATTGTAGTTCAAAAAGTTTTAAAAGTGGAAGGCTACCGCCTTTGAAAAAAGAACAAAATTTCAACATCAAAAGTAACTCTTCTCTTTGTGATTTTGTGGGCACCAAATGCTTGCATAAGAATCCTCATGCATTTATAAGGGTGAATTAAAGTTCTTTTTATATATAAAACTCACCTCTTGTGAAAATAAGATTTAAACTGACATTTAACTCCAGCTCCTTTTAGCGTTTCTATACTTCTATTGAAGCTGAAGTTTCACATCTAAAAAAAAAGACATGTAATCCAACGATCAAGATGCATTGGGCAGCTTCCCACCAAGTAATCACATGATATTAGAACCTTTATACTATCAAGTGAAAAGGATAAAGCTAATTGTAATGCTTTACAAGCTAATAGCAAGTTAAAAGCTAGCTTTATTTTTGTAAGGTTTGCTCTTTATTTCTTTATTGAATTGCTCTCCATGTTTTTTTCTTTGTAGTAGGGAAAGCTGGTATCATGACAAACCATTAGATTCTAATACTGGGAGGATTCCAAACTTTGAGGTAATTATTTATCTTTTCTAGCTGATCACCATTGTAAACTAATATAAATTAGATAAAAACATGGTTAATTATAATCTAATAGTGCTGTACTAGGTTCGCTGATTGGCTGAGAGATTTTTACTCATGTTTCAGACTCAACGTTGCTTTATATGTATATTTTACACACATAAGTTGGTTGTATCATATTATTTTTATGTTTATATGCAGAATGTAATGCAATATAAAGGAATAAACATGGCATATGATCTCAACTCCATATCGTGCACACAAGAACAAAGTGCAACGAAGCCTAATCTAGAGTTCACTTTGGGAGGGCCACATTCACGATAAACTTCAAAATTCAGAAGATAGAATGATGAATTATGATCAAATTAATGAGAGGATAGCGATCGTGCTTTCTTAAAAGTAGTAGACAAAAGGAAGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261049.1	1.2e-78	probable transcription factor KAN2 isoform X1
Swissprot	Q9C616.1	2.5e-41	Protein KANADI 2
trEMBL	A0A5P1F5M3	8.4e-79	Myb-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G17695.1	38.79	1e-43	173	KAN3	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05329	AT4G17695.1	348	149	11	1	314	1	318	38.79	1e-43	173
AfisC5G05329	AT1G32240.1	196	77	7	131	315	196	388	53.57	1e-41	167
AfisC5G05329	AT5G16560.1	206	74	8	130	314	201	398	50.00	1e-39	160

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	150	201	29.9	4.3e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003904	F	deoxyribodipyrimidine photo-lyase activity
GO:0005618	C	cell wall
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009650	P	UV protection
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009956	P	radial pattern formation
GO:0010051	P	xylem and phloem pattern formation
GO:0010158	P	abaxial cell fate specification
GO:0010229	P	inflorescence development
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity
GO:0080060	P	integument development
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network