result

Gene information

Detail information of AfisC5G05346

Location

Gene	Chr	Start	End	Strand
AfisC5G05346	chr5	986990036	986991434	+

Sequences

CDS

Protein

Gene

>AfisC5G05346
ATGGTTCGACATATGAATTTGATAAAAACTATCGGTGTATGTTCTGATTCAGACTTCAAAGCTTTGGTTCTCCAGTTCATGCCAAATGGGAGTCTTGATCAATGGTTGTATTCAGATGATAAATTTCTCAGTCTTATACAGAGATTGAATATAATGGTTGATGTTTCTTTAGCAGTCGAACATCTTCATTATCACCATTCTTATACAGTGATTCACTGCGATTTGAAACCGAGTAATGTTTTATTGGATGAAGAAATGGTGGCGCATGTTGGTGATTTTGGCATTGCAAAGTTGTTGCTTAGCAGTAGTAAAACTTCGATATCAACTAGTGTTTCAGGAGGCACCATAGGTTACATACCACCAGGTAATATACCAAAATTTTATAATTTATTTGTAAACCCAAGTACTGAGCTTTACTTGTAAATCCGAGAGAGGCATATTGGTGACTTTATATCATAACCTGTTTCAAATTTATACTTCTCGCTCCTTCACTTAATTTAGGCAGCAGCTTATTTATGCATTTTACTTCTAGGCAACTTTCCCATGCAACTGCACTTAGATTTGCATCATAAAACTTCGTTTTAGTAAAACTGGATGACATAAAATTTGTTAATGAATCATTCTTCATTTTGCAAAAATAGAGAAACTGTTCTCCATTTAATAGCAAGTATATATAACTACATCTGCAAATTGAGAACCACTATTCATTAACTTCCATTTTGGCTAATCGGATGATATCTGGAGAATATCTTCATATGATTTATTTATTTATTTTCCATATTGGAATTTTCTATGTGCAAAACTATTGGAGATGCTTTGAGTCAATTTTTATGTGTATTTCATGAGCAATTATATGTTATTTATGTCTCAGTAGCAATTCTTTGATAAAAGAACCTGAATCCTTCTAAAAGTAGTTGGCAAACGTGTTTCAAACCATTTTCCTACTTCTTTGAGAATATATACTGAAATTCATTTCATTAAAGCCGATATCTGCAGAATTCTAACATTAGTTTTCAACATATTTTCAACAGAGTATGCATCATTAGGAAAAGTTTCAAGAATGGGCGATGTTTATAGTTTCGGGATCCTTTTACTGGAATCATTCACTAGAAAGAAGCCTACTGATGTTATGTTCAATGGAGAACTAAGTTTAAGGAACTGGATAAATGATTTATACACTAACCAATTATCGAATGTCGTCGATAATAATCTATTGAAAGATACGCACGAAGATTTAGCTGCAACAGGCCAATGCTTATCATCTGTTATTGAATTGGGCTTGATGTGTTCAAGACATTCACCTACAGACAGAATTCCAGTGACAACTGTGGTGTCAAGTTTACATAAAATAAGAGAGGAGTACATGTCAAGAATTCAATGCTATACTGAATATGTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260658.1	3.4e-78	probable LRR receptor-like serine/threonine-protein kinase At3g47570
Swissprot	C0LGP4.1	1.7e-50	Probable LRR receptor-like serine/threonine-protein kinase At3g47570
trEMBL	A0A6I9SHL1	1.9e-75	probable LRR receptor-like serine/threonine-protein kinase At3g47570

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G47570.1	42.17	4e-52	201		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05346	AT3G47570.1	249	127	3	2	233	754	1002	42.17	4e-52	201
AfisC5G05346	AT3G47580.1	249	131	3	2	233	755	1003	40.56	6e-51	197
AfisC5G05346	AT3G47110.1	250	126	5	2	233	771	1020	42.40	2e-50	195

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	2	221	106.6	1.2e-30

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001944	P	vasculature development
GO:0002764	P	immune response-regulating signaling pathway
GO:0042742	P	defense response to bacterium
GO:0004674	F	protein serine/threonine kinase activity
GO:0005496	F	steroid binding
GO:0005768	C	endosome
GO:0006898	P	receptor-mediated endocytosis
GO:0009556	P	microsporogenesis
GO:0009626	P	plant-type hypersensitive response
GO:0009729	P	detection of brassinosteroid stimulus
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009826	P	unidimensional cell growth
GO:0009911	P	positive regulation of flower development
GO:0010067	P	procambium histogenesis
GO:0010089	P	xylem development
GO:0010204	P	defense response signaling pathway, resistance gene-independent
GO:0010223	P	secondary shoot formation
GO:0010224	P	response to UV-B
GO:0010234	P	anther wall tapetum cell fate specification
GO:0010268	P	brassinosteroid homeostasis
GO:0010359	P	regulation of anion channel activity
GO:0010584	P	pollen exine formation
GO:0016045	P	detection of bacterium
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0042803	F	protein homodimerization activity
GO:0043167	F	ion binding
GO:0043234	C	protein complex
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0046982	F	protein heterodimerization activity
GO:0048366	P	leaf development
GO:0051301	P	cell division
GO:0052544	P	defense response by callose deposition in cell wall
GO:0060548	P	negative regulation of cell death
GO:1900140	P	regulation of seedling development
GO:1901363	F	heterocyclic compound binding
GO:1901576	P	organic substance biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network