result

Gene information

Detail information of AfisC5G05384

Location

Gene	Chr	Start	End	Strand
AfisC5G05384	chr5	991273165	991277156	+

Sequences

CDS

Protein

Gene

>AfisC5G05384
ATGTTTGAGGACTCCGGTTATTTTGATCCCTCCCAAGTAATTCAAGACAATTACAGTGATGGGGCGGTATTAATGGAAGATAATATACAAATTGATATTGCGGATGCCTCAGGCTTAAATCTCGACCATCTTGGTTTCAACATGCACGAAGATGTCAACATTGCACCGACAATGGAAGCTACGAATTGGGAGCCACCAATCAATCAGCAGTACAGTCAAACATATGGCCCTTCCCCAGACCTTTTGAACTTAATGCAAGTACCAACTTATCATCAACCACCTGAAATGGGCCCAATGTTCTACGATCCGGCTATGAATATGGGCTATAATGCTGGGCCTCAAGCGGGACCTGATCTGTTGAGAGACTTATATCAGTCTCTGCCTCAGAGTTATGGTTTATTTTGTGGAGTGGAGGAGAGAGAAAACAACAATGGAATATTTCAAGAAATGCAGTTTGTCGATGGAGGAGTTATTGATTATAGAGGAGTCGATGGAGGAGTTATTGATTATAGAGGAGTAGAAATTTCTAACAATTTGGGAAAAGGAGAGGTTAAAGGAAACTTTTGCACTGAAAAGCACAGGAGAGAGCAGTTGAATGAGAAGTATAAGACTTTGAAATCACTAGTTCCTACTTCTACTAAGGTACCTTTTTTTATATACTAATTTCAACCTTTATCATCTTTTTAGAACCTAGGGACTGAAATAGTAAATATATGTTACATGTACTAAACCATATGTTTGCTTTCCAACAATGAAATTTTGCTGTTTTTTCTCCACCTTATATCTTTTACAGTTAATCTTATTAATTACAAGCTCACCAGCTATTATTTTTAGCCTTTACCTTTATTCTATTCAAAACATATTCTCTTGCCATGGCTATCTATATGCAATTAAGTATAAGATGCTGAATAATTCCATATTACGAGTTTGATAGTATGACTAGTCAATCACCTGTCCTTGAATTCTTTTGATTATAGAAACTTGAATGCAAAAAATACAACAATAAGATGCTTAGCTGGCACATGGTATTTCATCCTCAAGCATGCTAACCATAAGTTTGTTCATATAATTGTATAGGGAGACAGAGCATCCATAGTTGGAGATGCAATAGAGTACATAAAAACTCTTCTCCAAAATCTGGAGGAACTCAAAACACAAGTAGAGAAAAAGAAACATGGAATCACACGTCAAATACCGAAAGCTGAAGATATTGATGCAGTAGGTGACGTGGAAAGTTCATCGATAAAGCCTATGCAAGATAATGGATCATTAAGATGCTCTTGGATTCAGAAGAAGTCTAAAAAAAGCATCGTTGATGTTCGTATCATCGATAATGAAGTGAATGTCAAGCTTACTCAGACGAGGAAGTCTAATTGCTTGCTCTATGTGGCGAAAATGTTGGAAGAGTTCCAACTTGACATTGTTCATGCTTCTGGAGGGAATATAGGGGATAGCTGTGTCTACATGATTAATGCCAAGGTATGCATATTATCTTTTAACTTCTGCTAATGTTATATGTTTCCATAGGATCTTATTACTCTTTGCTATATGTTTATCTGTCTCTAGTGTATGCATCACTCTGCATGCTTCTTCATAATGATTCCCAGTCTCATGCTTATACTGTACACTGATAAAACAATGCAGCAAATACAAAAACTGTTTCTTTTAGAAGAACAATAAAGAATAAACCCTAAAGAATACTGAGACTTATTCTAGATGACCGCCTCTGCCTCTTGAAAAATTTGATAAACTAGACTTATTCTATAACTGCTCAATTATTGGTAAGATGAGTTCAATCTTTAGTCTGTTTTTTCTTATACATTTATTCTTGGTTTTATTTATGAACTTTCTTAGCTAACTAAATTCCTTTTTCCACTCAACTGCAATTATTAGAATTATTACAAGTTTTAGGTTTGATAAAATAGCAAGAAAAGTTGTTTTATAGTAGCAGTTACGAAGTATTTTTGGATGATTTTAATGTTATGTTTCCAAGTAGAAAATTATGGGCATGCCTTGGGTGGCGAAACTTGTCTATGACTTCAGGTATGGTAGATAAAATTGATTAATTATTCCAGGTAGAGGGCGAAAATAAATTAAAATTAAAATTCATTTTTATTGAAAAAATGATTGAACGACAGGGTACATGCAGTGGCCCCAGCTAGCCATTACCCACCTGCTTCCCTGCATGCATGAATGGATAAAAATATAGAAAGTAACCGATAGTAAAACTTTAAAATGAGCGCTCTAACTTTGTTTATAAATCCTTCTATTTCGCAGTAATAGCCAATTTTTTTGCCATATTAATAGATATACGTGCATTACTTCCTATATTTTTATTACATGTAGCCTATTTTGAATAACATGTGGTACCGTCCTCCCCACTATAGACACAAGTATGTTTGATATTTACATTTCACTTCAGAGGCAAGCTTGGCAGCAAAGAAAAACTAATGGGCTGTGGATTTGGACCATGAACACACGCTACCGAAACGTTTATTTTCCCGATAATAATAGTATAACACATTTCAGACCTTATGTCCATACATCGAGGCTTGTGCACTAAGTTCCCCTTTATTTCAAATTTATACTTCAACTATTATAGTAGGTAGATATAAATGCATAACATATGTACTTCTGCCTCATAAACGTAAGCATCTTAGATTCTTAATAGATACAGACATATACATACAGTGTCGGTCCTAACGCGTTGGTTGCCCTAGGCACAAACGTATAAAAAAATTGAGCAACCAAGAGTTGAACCTTGGTTGCCCAGGTCACATACAAAGCTTTAAACCATTATGCTATTGGTTTCTTATACAAATTTTTGCCCTGCAACATTTATACATCAATATTTTTAAAGGCATCTACAACATTTTGTTGCCCCCTTCGCCATCTCCGGCGGTGTTGCTCTAGACGAAGACCTTGTTTGCCTTGCCTTTGGGCCGGGCCTGCATACATATATATATACATATACACATATACATACATATATATACACACACATGTATATATATATATATATATATATATATATATATATATATATATATCTTAGATATTAAGAATTTTCGCCTGCAAACCAACCCTAGTTCACAAAATGCAGTTCCCCATAACTAGGCCTGTCAATGGTACGGGCTTCGGTCCAGGCCCAGCCCGAACCCGTCTTATTTATACGGGTACGGGTTTTGCCTTTTACTACCCAAGCCCGACTCAGGCCCAATCCGGGTCGGGTACGGTTTTATCAAAACCCGGTCCGATTGGCCCGACCCGACTATTAGTTTTTCAACGTATCAAAACATGAGTGTGTTTGTTATTTATTTACCATTTTGTTTGTTTACATGTAAATGTTTTTGCATATTTTTATTATGAGCTTGATTACATCACCGTCCAATTTATATGTTAGCATTGTTTTTATATAAATTTTACCAAAGTTGCAGTTTTAAAATATGGTTCTAACATAAATATTCTGAGTTAGGTATATAGTTATTACCCAGCGGGTTTAAAAAGCCCGACGGGCCGGGCTCGGATATTGGGTTGAAATACCCTGCGTGTTCGGGCCGGGCTCGGGTTTTAATTATTATAATTGGACTCGGGTCTGAGTTTTATAATACCTGGACCGAACCCTGCCCATTGACAGGCCTACCCATAACACAATTGTCCTCAAAGTGGATAATGAAAACAAACACTTTTGCCTATACCTTAGATAATAATCACACAATTTGTTTTTACTGTATTTCTCATAGCCTCAAGATATTAAGAATCATGCTTCTAAAGCACTATATATATATCTTTGTCATAAGATTTTGATTTTTTGATACTTGTTCAGTTCTCTACTAGAGTATAATGAATAAAAAGTAATTAATACCTTTCTGTTCATTAACATGCAGATGCGTGAGGGATCATCAGTGTATGCAGGTGCAACAGCAAGGAAACTTCTTGAAGTTATGGACAGACAACACCCAGTCCTAACATTACCAGCTGCTTGCTATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260581.1	2.4e-86	transcription factor EAT1-like isoform X1
Swissprot	Q7X8R0.2	2.0e-53	Protein ETERNAL TAPETUM 1
trEMBL	A0A7M3UQH4	1.5e-85	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G06170.1	36.93	3e-46	182		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05384	AT1G06170.2	306	158	8	78	372	123	404	36.93	3e-46	182
AfisC5G05384	AT1G06170.1	306	158	8	78	372	123	404	36.93	3e-46	182
AfisC5G05384	AT2G31210.1	335	172	12	74	382	110	428	36.12	8e-44	174

Ortholog group

Species	Genes
Allium cepa	g157227.t1; g425426.t1
Allium fistulosum	AfisC5G05384
Allium sativum	Asa0G03777.1; Asa6G05730.1; Asa7G07433.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g51070.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	189	231	38.3	8.9e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009753	P	response to jasmonic acid
GO:0009813	P	flavonoid biosynthetic process
GO:0010440	P	stomatal lineage progression
GO:0045165	P	cell fate commitment
GO:0048522	P	positive regulation of cellular process
GO:0048658	P	anther wall tapetum development
GO:0052543	P	callose deposition in cell wall
GO:0090627	P	plant epidermal cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network