Detail information of AfisC5G05398


Location
GeneChrStartEndStrand
AfisC5G05398chr5993035388993040124-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020260668.15.3e-98growth-regulating factor 4-like
SwissprotQ6AWY6.25.1e-69Transcription activator GRF3
trEMBLA0A5P1F0F33.8e-98Growth-regulating factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G13960.160.531e-38 157AtGRF5;GRF5growth-regulating factor 5

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag396887.t1
Allium fistulosumAfisC5G05398
Allium sativumAsa6G05566.1
Arabidopsis thaliana
Oryza sativaLOC_Os02g47280.1; LOC_Os02g47280.2; LOC_Os04g51190.1; LOC_Os04g51190.2; LOC_Os04g51190.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08880.8QLQDomain74158.53.5e-16
PF08879.7WRCDomain7011272.51.6e-20

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0005739Cmitochondrion
GO:0005773Cvacuole
GO:0005829Ccytosol
GO:0005524FATP binding
GO:0005618Ccell wall
GO:0005635Cnuclear envelope
GO:0005794CGolgi apparatus
GO:0006355Pregulation of transcription, DNA-templated
GO:0006995Pcellular response to nitrogen starvation
GO:0008285Pnegative regulation of cell proliferation
GO:0009506Cplasmodesma
GO:0009570Cchloroplast stroma
GO:0009624Presponse to nematode
GO:0009631Pcold acclimation
GO:0009739Presponse to gibberellin
GO:0009742Pbrassinosteroid mediated signaling pathway
GO:0044212Ftranscription regulatory region DNA binding
GO:0016036Pcellular response to phosphate starvation
GO:0050826Presponse to freezing
GO:0019760Pglucosinolate metabolic process
GO:0046686Presponse to cadmium ion
GO:0019904Fprotein domain specific binding
GO:0030912Presponse to deep water
GO:0043565Fsequence-specific DNA binding
GO:0045309Fprotein phosphorylated amino acid binding
GO:0048046Capoplast
GO:0048364Proot development
GO:0048366Pleaf development
GO:0051365Pcellular response to potassium ion starvation
GO:0061062Pregulation of nematode larval development

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.