result

Gene information

Detail information of AfisC5G05445

Location

Gene	Chr	Start	End	Strand
AfisC5G05445	chr5	1001377930	1001379692	+

Sequences

CDS

Protein

Gene

>AfisC5G05445
ATGAAGACTCCTCTACTGTTCACGTCCAACGCTGGCGAAGCTGTTACTGCAAGCGAAGGCACATCCACCGTCAGCAGTGCCGTTTTCAACCTTTCTACTACTATAATTGGTTGCGGAATCATGTCCATTCCAGCCACACTCAAAATACTTGGAATTTGTCCAGCCTTCTTCTTAATCGCCTTCGTTGCATTCTTATGTGACAAATCAGCTCAGTTCATGTTAAGGTAATTAAATCCTTAAAATACAACTGCACTATTTTGTTATAATTTATTCTTATTTTAATTACCTTAGAATAACTGAACGTAGAATAGCTAGTCAGCTTTCCAACGTTTGTCATGTAATAAATATGTGGTGTTTAATTAAAAGCAAACATGAGAATAATTCAGGTACACATCATATGGAAAATCAGCCACTTATGTCGAACTCATGACAGAATCTTTTGGCAAGGTTGGGTCGGTGCTGCTACATATTAAATTTGTTACATTGTAACAATATAAGATTATGAATCATATTATAAACAATCATGATGTCTAGTAAATTGAATAACAGTAGTTCACAGGAAACTACCATTTTTTAATCTTTATTTGCATAAATGTATCAAAACAAGCAATGTTTAGCAACGAATATGTTACTTATGCAAAAGCTTTACATAAAAGTCCTTGATAATGCAAATATGGAGTAATTTGTATATGTAATTAAGTAGTTTTTTCTTGTCAATTTAAATGTGATTAGATGTTTTATTTTATAGAGTGGATTTAGCACATGTTACCATTCAAATGTTTTAGAATCATTTGGTGTCTAATTTTATTTTCTCCAGCTTGTAACTTAGAGGAGGAGTGAACTATAAATCTAATGTTGGAGATGCTCTTAGTTACTGAATTAGAAGTTGGATATATTTTTGCCCCTTGTGCAACTAAAAGACTCAAAATTGTTGCATCAATATGTATGATTTCAACTATGCTACTAAAACCGGCCTAAACAGGGAACGAGTGTATACGGGAACAATAACAGCCTTTTAAATCATAATAGCCCCGTTATCACAAATGTCCTAACATCTCTTCAGACTATTTAGTTGCTTTGTTAGCCAGAAAATGGAAACCCTGCCTCATCACATCATGTTTTTAATGTTCGAAGAATGTTTCTTTGGGTATCGCCATAGCCCAATAAGAATTGTTTTCTTTTGAAATATTTATATTAATTATGCACTAATTTGGTATTGACATCAAACAATATAACCAAGTTCTAAATTTAGATGAATAACAATTTATTTTCTATTAGAGCACATTTCCATTTTGTTCCCAACTTAAACTAGTGTCCTTTCTTCATAACAAGAAGCATCTTGCCTTTTTTTTTAGGTGATCGGAGCGCTAGGGTTCATGGACCAAAGGTTGGAGCTACCGAAAGACTTGGATCCTCGATGGGCTTCAATTATTGAGAGTTGTTGGCATCGGTAATGTCCATCTGAGTAGCTATTTTATTCTGTTGTTCTTATGCAATTATGTGCTTTTATGTAATATTATACTCAACTTTTACATAAATGCAGGGATCCAAAAGAACGACCTTCATTTCAAGAACTACTAGAATAGTTTAAAGGATTGCAGATGAAATTTGCTGCACAATCTCAATTGCAGTGGTCACAGAATGCTACTAAAGTAAAAGATACGGACTAGGTACTTTACTGTAATTAAGAGATTGATCAGTAACAAAGAAAACATGCTTCTCAGCCAAAATAACGATTATGGGAAATGGTTTGCTGCATGAAG

Functional annotation

Database	accession number	e-value	annotation
nr	RWR79000.1	2.5e-17	Amino acid transporter
Swissprot	F4KBM7.1	2.8e-13	Amino acid transporter AVT6B
trEMBL	A0A3S3MSW9	1.8e-17	Amino acid transporter

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G06640.1	73.91	1e-17	85.5		PAS domain-containing protein tyrosine kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05445	AT3G06640.1	46	12	95	140	651	696	73.91	1e-17	85.5
AfisC5G05445	AT3G06620.1	46	13	95	140	699	744	71.74	3e-17	84.0
AfisC5G05445	AT5G49470.1	46	16	95	140	409	454	65.22	3e-17	84.0

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01490.15	Aa_trans	Family	21	96	39.7	2.1e-10
PF07714.14	Pkinase_Tyr	Domain	103	139	25.5	6.4e-06

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000165	P	MAPK cascade
GO:0005515	F	protein binding
GO:0001666	P	response to hypoxia
GO:0002229	P	defense response to oomycetes
GO:0005829	C	cytosol
GO:0004709	F	MAP kinase kinase kinase activity
GO:0004712	F	protein serine/threonine/tyrosine kinase activity
GO:0005275	F	amine transmembrane transporter activity
GO:0015171	F	amino acid transmembrane transporter activity
GO:0005730	C	nucleolus
GO:0005769	C	early endosome
GO:0005774	C	vacuolar membrane
GO:0005789	C	endoplasmic reticulum membrane
GO:0005802	C	trans-Golgi network
GO:0006865	P	amino acid transport
GO:0008219	P	cell death
GO:0009414	P	response to water deprivation
GO:0009686	P	gibberellin biosynthetic process
GO:0009744	P	response to sucrose
GO:0009750	P	response to fructose
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010182	P	sugar mediated signaling pathway
GO:0012510	C	trans-Golgi network transport vesicle membrane
GO:0046777	P	protein autophosphorylation
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:1900150	P	regulation of defense response to fungus
GO:1900424	P	regulation of defense response to bacterium
GO:2000031	P	regulation of salicylic acid mediated signaling pathway
GO:2000035	P	regulation of stem cell division
GO:2000069	P	regulation of post-embryonic root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network